Annotation Detail for CARD6
Basic Information Top
| Gene Symbol: | CARD6 ( CINCIN1 ) |
|---|---|
| Gene Full Name: | caspase recruitment domain family, member 6 |
| Band: | 5p13.1 |
| Quick Links | Entrez ID:84674; OMIM: 609986; Uniprot ID:CARD6_HUMAN; ENSEMBL ID: ENSG00000132357; HGNC ID: 16394 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.200242
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 2 / 564012 | 3 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 12 / 1939121 | 6 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 |  |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 13 / 3360307 | 3 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 0 / 1100989 | 0 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 0 / 210574 | 0 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_1607_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.73 ± 0.6 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5 ± 0.28 | |
| Basal Part of Pons | 4.69 ± 0.37 | |
| Cerebellar Cortex | 4.87 ± 0.3 | |
| Cerebellar Nuclei | 5.87 ± 0.52 | |
| Claustrum | 4.93 ± 0.59 | |
| Epithalamus | 5.65 ± 0.5 | |
| Frontal Lobe | 4.87 ± 0.6 | |
| Globus Pallidus | 6.61 ± 0.39 | |
| Hypothalamus | 5.36 ± 0.39 | |
| Insula | 4.92 ± 0.53 | |
| Limbic Lobe | 4.9 ± 0.69 | |
| Mesencephalon | 5.36 ± 0.49 | |
| Myelencephalon | 5.13 ± 0.55 | |
| Occipital Lobe | 5.11 ± 0.66 | |
| Parietal Lobe | 4.92 ± 0.62 | |
| Pontine Tegmentum | 5.08 ± 0.72 | |
| Striatum | 5.63 ± 0.65 | |
| Subthalamus | 4.92 ± 0.32 | |
| Temporal Lobe | 4.88 ± 0.59 | |
| Thalamus | 5.22 ± 0.43 | |
| White Matter | 6 ± 0.68 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Card6 | CB | Cerebellum | 100 | |
| 100 | | |||
| Card6 | CTX | Cerebral cortex | 89.22 | |
| 73.07 | | |||
| Card6 | HIP | Hippocampal region | 61.56 | |
| 92.23 | | |||
| Card6 | HPF | Hippocampal formation | 55.99 | |
| 69.54 | | |||
| Card6 | HY | Hypothalamus | 40.84 | |
| 33.36 | | |||
| Card6 | LSX | Lateral septal complex | 51.71 | |
| 42.38 | | |||
| Card6 | MB | Midbrain | 50.58 | |
| 47.49 | | |||
| Card6 | MY | Medulla | 39.52 | |
| 47.72 | | |||
| Card6 | OLF | Olfactory bulb | 88.04 | |
| 100 | | |||
| Card6 | P | Pons | 36.9 | |
| 36.48 | | |||
| Card6 | PAL | Pallidum | 49.03 | |
| 44.42 | | |||
| Card6 | RHP | Retrohippocampal region | 47.34 | |
| 40.71 | | |||
| Card6 | sAMY | Striatum-like amygdalar nuclei | 60.41 | |
| 51.82 | | |||
| Card6 | STR | Striatum | 66.36 | |
| 57.3 | | |||
| Card6 | STRd | Striatum dorsal region | 63.53 | |
| 53.57 | | |||
| Card6 | STRv | Striatum ventral region | 79.95 | |
| 71.4 | | |||
| Card6 | TH | Thalamus | 45.49 | |
| 38.4 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| CARD6_HUMAN_2 | 12 | 2 | 13 | ATESTPSEIIER | PRIDE |