Annotation Detail for ACCS
Basic Information Top
| Gene Symbol: | ACCS ( ACS,PHACS ) |
|---|---|
| Gene Full Name: | 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional) |
| Band: | 11p11.2 |
| Quick Links | Entrez ID:84680; OMIM: 608405; Uniprot ID:1A1L1_HUMAN; ENSEMBL ID: ENSG00000110455; HGNC ID: 23989 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.126706
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 15 / 564012 | 26 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 62 / 1939121 | 31 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 103 / 3360307 | 30 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 |  |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 2 / 29757 | 67 | |
| blood | 3 / 123478 | 24 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 21 / 1100989 | 19 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 1 / 89626 | 11 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 1 / 24145 | 41 | |
| liver | 10 / 207743 | 48 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 9 / 107715 | 83 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 6 / 96619 | 62 | |
| testis | 13 / 330442 | 39 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 23 / 232878 | 98 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P24586
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.94 ± 0.56 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.06 ± 0.77 | |
| Basal Part of Pons | 3.66 ± 0.47 | |
| Cerebellar Cortex | 4.5 ± 0.43 | |
| Cerebellar Nuclei | 4.05 ± 0.56 | |
| Claustrum | 3.39 ± 0.74 | |
| Epithalamus | 4.99 ± 0.73 | |
| Frontal Lobe | 4.02 ± 0.53 | |
| Globus Pallidus | 4.23 ± 0.57 | |
| Hypothalamus | 4.03 ± 0.61 | |
| Insula | 4.14 ± 0.55 | |
| Limbic Lobe | 4.01 ± 0.58 | |
| Mesencephalon | 4.16 ± 0.5 | |
| Myelencephalon | 4.1 ± 0.6 | |
| Occipital Lobe | 4.03 ± 0.63 | |
| Parietal Lobe | 3.96 ± 0.57 | |
| Pontine Tegmentum | 3.98 ± 0.61 | |
| Striatum | 3.97 ± 0.53 | |
| Subthalamus | 4.15 ± 0.76 | |
| Temporal Lobe | 4.09 ± 0.55 | |
| Thalamus | 3.9 ± 0.59 | |
| White Matter | 3.85 ± 0.46 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 2610203E10Rik | CB | Cerebellum | 0.17 | |
| 0.51 | | |||
| 2610203E10Rik | CTX | Cerebral cortex | 3.42 | |
| 2.62 | | |||
| 2610203E10Rik | HIP | Hippocampal region | 0.32 | |
| 0.4 | | |||
| 2610203E10Rik | HPF | Hippocampal formation | 0.25 | |
| 0.31 | | |||
| 2610203E10Rik | HY | Hypothalamus | 3.26 | |
| 4.99 | | |||
| 2610203E10Rik | LSX | Lateral septal complex | 0.1 | |
| 0.1 | | |||
| 2610203E10Rik | MB | Midbrain | 0.17 | |
| 0.43 | | |||
| 2610203E10Rik | MY | Medulla | 0.66 | |
| 1.09 | | |||
| 2610203E10Rik | OLF | Olfactory bulb | 2.95 | |
| 2.51 | | |||
| 2610203E10Rik | P | Pons | 1.65 | |
| 3.41 | | |||
| 2610203E10Rik | PAL | Pallidum | 0.97 | |
| 0.82 | | |||
| 2610203E10Rik | RHP | Retrohippocampal region | 0.11 | |
| 0.18 | | |||
| 2610203E10Rik | sAMY | Striatum-like amygdalar nuclei | 0.84 | |
| 0.75 | | |||
| 2610203E10Rik | STR | Striatum | 0.92 | |
| 0.68 | | |||
| 2610203E10Rik | STRd | Striatum dorsal region | 0.98 | |
| 0.72 | | |||
| 2610203E10Rik | STRv | Striatum ventral region | 1.36 | |
| 0.9 | | |||
| 2610203E10Rik | TH | Thalamus | 0.21 | |
| 0.2 | |