Annotation Detail for HDGFRP2
Basic Information Top
| Gene Symbol: | HDGFRP2 ( HDGF2,MGC2641 ) |
|---|---|
| Gene Full Name: | - |
| Band: | 19p13.3 |
| Quick Links | Entrez ID:84717; OMIM: NA; Uniprot ID:HDGR2_HUMAN; ENSEMBL ID: ENSG00000167674; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.43071
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 20 / 564012 | 35 | |
| neonate | 1 / 31097 | 32 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 59 / 1939121 | 30 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 9 / 106883 | 84 | |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 82 / 3360307 | 24 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 11 / 104616 | 105 | |
| primitive neuroectodermal tumor of the CNS | 16 / 125680 | 127 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 6 / 125191 | 47 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 2 / 29757 | 67 | |
| blood | 3 / 123478 | 24 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 41 / 1100989 | 37 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 11 / 215722 | 50 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 12 / 211054 | 56 | |
| heart | 1 / 89626 | 11 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 3 / 24145 | 124 | |
| liver | 3 / 207743 | 14 | |
| lung | 8 / 336974 | 23 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 18 / 214812 | 83 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 2 / 20155 | 99 | |
| skin | 6 / 210574 | 28 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 5 / 330442 | 15 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_620_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.79 ± 0.4 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.41 ± 0.32 | |
| Basal Part of Pons | 7.36 ± 0.33 | |
| Cerebellar Cortex | 7.51 ± 0.42 | |
| Cerebellar Nuclei | 6.98 ± 0.23 | |
| Claustrum | 7.98 ± 0.44 | |
| Epithalamus | 7.1 ± 0.3 | |
| Frontal Lobe | 7.31 ± 0.46 | |
| Globus Pallidus | 7.72 ± 0.26 | |
| Hypothalamus | 7.15 ± 0.49 | |
| Insula | 7.39 ± 0.55 | |
| Limbic Lobe | 7.79 ± 0.49 | |
| Mesencephalon | 7.51 ± 0.46 | |
| Myelencephalon | 7.51 ± 0.45 | |
| Occipital Lobe | 7.72 ± 0.44 | |
| Parietal Lobe | 7.5 ± 0.47 | |
| Pontine Tegmentum | 7.42 ± 0.42 | |
| Striatum | 7.7 ± 0.51 | |
| Subthalamus | 7.11 ± 0.17 | |
| Temporal Lobe | 7.51 ± 0.42 | |
| Thalamus | 7.35 ± 0.33 | |
| White Matter | 7.95 ± 0.54 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Hdgfrp2 | CB | Cerebellum | 44.77 | |
| 100 | | |||
| Hdgfrp2 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Hdgfrp2 | HIP | Hippocampal region | 100 | |
| 100 | | |||
| Hdgfrp2 | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Hdgfrp2 | HY | Hypothalamus | 98.55 | |
| 100 | | |||
| Hdgfrp2 | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| Hdgfrp2 | MB | Midbrain | 84.76 | |
| 100 | | |||
| Hdgfrp2 | MY | Medulla | 71.49 | |
| 100 | | |||
| Hdgfrp2 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Hdgfrp2 | P | Pons | 57 | |
| 92.01 | | |||
| Hdgfrp2 | PAL | Pallidum | 100 | |
| 100 | | |||
| Hdgfrp2 | RHP | Retrohippocampal region | 94.26 | |
| 100 | | |||
| Hdgfrp2 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 100 | | |||
| Hdgfrp2 | STR | Striatum | 100 | |
| 100 | | |||
| Hdgfrp2 | STRd | Striatum dorsal region | 100 | |
| 100 | | |||
| Hdgfrp2 | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| Hdgfrp2 | TH | Thalamus | 100 | |
| 100 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00001169 | 20 | 496 | 515 | CLNALEELGTLQVTSQILQK | Peptide Atlas |