Annotation Detail for USP30
Basic Information Top
| Gene Symbol: | USP30 ( FLJ40511,MGC10702 ) |
|---|---|
| Gene Full Name: | ubiquitin specific peptidase 30 |
| Band: | 12q24.11 |
| Quick Links | Entrez ID:84749; OMIM: 612492; Uniprot ID:UBP30_HUMAN; ENSEMBL ID: ENSG00000135093; HGNC ID: 20065 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.486434
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 18 / 564012 | 31 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 31 / 1939121 | 15 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 5 / 263845 | 18 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 70 / 3360307 | 20 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 |  |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 28 / 1100989 | 25 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 10 / 211054 | 47 | |
| heart | 1 / 89626 | 11 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 5 / 210574 | 23 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 9 / 330442 | 27 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P390055
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.39 ± 0.45 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.65 ± 0.32 | |
| Basal Part of Pons | 6.68 ± 0.3 | |
| Cerebellar Cortex | 7.03 ± 0.22 | |
| Cerebellar Nuclei | 6.91 ± 0.35 | |
| Claustrum | 6.34 ± 0.56 | |
| Epithalamus | 6.8 ± 0.39 | |
| Frontal Lobe | 6.89 ± 0.39 | |
| Globus Pallidus | 6.9 ± 0.22 | |
| Hypothalamus | 7.13 ± 0.48 | |
| Insula | 7 ± 0.23 | |
| Limbic Lobe | 6.76 ± 0.35 | |
| Mesencephalon | 6.87 ± 0.43 | |
| Myelencephalon | 6.85 ± 0.39 | |
| Occipital Lobe | 6.7 ± 0.33 | |
| Parietal Lobe | 6.79 ± 0.37 | |
| Pontine Tegmentum | 6.89 ± 0.34 | |
| Striatum | 6.57 ± 0.32 | |
| Subthalamus | 7.08 ± 0.13 | |
| Temporal Lobe | 6.89 ± 0.36 | |
| Thalamus | 6.81 ± 0.39 | |
| White Matter | 8.1 ± 0.1 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Usp30 | CB | Cerebellum | 56.54 | |
| 69.23 | | |||
| Usp30 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Usp30 | HIP | Hippocampal region | 80.64 | |
| 100 | | |||
| Usp30 | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| Usp30 | HY | Hypothalamus | 92.49 | |
| 81.55 | | |||
| Usp30 | LSX | Lateral septal complex | 100 | |
| 87.38 | | |||
| Usp30 | MB | Midbrain | 80.67 | |
| 70.61 | | |||
| Usp30 | MY | Medulla | 55.25 | |
| 54.13 | | |||
| Usp30 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Usp30 | P | Pons | 57.83 | |
| 54.39 | | |||
| Usp30 | PAL | Pallidum | 84.59 | |
| 79.73 | | |||
| Usp30 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Usp30 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 86.73 | | |||
| Usp30 | STR | Striatum | 100 | |
| 100 | | |||
| Usp30 | STRd | Striatum dorsal region | 100 | |
| 100 | | |||
| Usp30 | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| Usp30 | TH | Thalamus | 94.96 | |
| 88.85 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00043181 | 19 | 183 | 201 | VTHLFDVHSLEQQSEITPK | Peptide Atlas |