Annotation Detail for HIRIP3
Basic Information Top
| Gene Symbol: | HIRIP3 ( - ) |
|---|---|
| Gene Full Name: | HIRA interacting protein 3 |
| Band: | 16p11.2 |
| Quick Links | Entrez ID:8479; OMIM: 603365; Uniprot ID:HIRP3_HUMAN; ENSEMBL ID: ENSG00000149929; HGNC ID: 4917 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.592046
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 15 / 564012 | 26 | |
| neonate | 3 / 31097 | 96 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 5 / 55556 | 89 | |
| adult | 63 / 1939121 | 32 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 7 / 94178 | 74 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 6 / 114246 | 52 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 6 / 106883 | 56 | |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 8 / 95842 | 83 | |
| liver tumor | 13 / 96359 | 134 | |
| lung tumor | 16 / 103127 | 155 | |
| lymphoma | 8 / 71755 | 111 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 139 / 3360307 | 41 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 32 / 125680 | 254 |  |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 13 / 124949 | 104 | |
| soft tissue/muscle tissue tumor | 8 / 125191 | 63 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 4 / 40015 | 99 | |
| bladder | 0 / 29757 | 0 | |
| blood | 5 / 123478 | 40 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 68 / 1100989 | 61 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 6 / 149255 | 40 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 8 / 211054 | 37 | |
| heart | 8 / 89626 | 89 | |
| intestine | 11 / 234472 | 46 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 1 / 24145 | 41 | |
| liver | 17 / 207743 | 81 | |
| lung | 28 / 336974 | 83 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 7 / 153271 | 45 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 2 / 20155 | 99 | |
| skin | 16 / 210574 | 75 | |
| spleen | 4 / 53952 | 74 | |
| stomach | 2 / 96619 | 20 | |
| testis | 15 / 330442 | 45 | |
| thymus | 7 / 81131 | 86 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 2 / 16999 | 117 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 204504_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 58.75 | |
| Adipocyte | 10.6 | |
| AdrenalCortex | 11.65 | |
| Adrenalgland | 11.95 | |
| Amygdala | 10.65 | |
| Appendix | 13.05 | |
| AtrioventricularNode | 10 |  |
| BDCA4+_DentriticCells | 15.8 | |
| Bonemarrow | 18.5 | |
| BronchialEpithelialCells | 11.85 | |
| CD105+_Endothelial | 17.2 | |
| CD14+_Monocytes | 7.2 | |
| CD19+_BCells(neg._sel.) | 12 | |
| CD33+_Myeloid | 12.55 | |
| CD34+ | 18.3 | |
| CD4+_Tcells | 13.45 | |
| CD56+_NKCells | 12.85 | |
| CD71+_EarlyErythroid | 24.8 | |
| CD8+_Tcells | 11.75 | |
| CardiacMyocytes | 20.45 | |
| Caudatenucleus | 12.45 | |
| Cerebellum | 13.05 | |
| CerebellumPeduncles | 15.55 | |
| CiliaryGanglion | 6.05 | |
| CingulateCortex | 13.7 | |
| Colorectaladenocarcinoma | 19 | |
| DorsalRootGanglion | 9.95 | |
| FetalThyroid | 13.2 | |
| Fetalbrain | 13.5 | |
| Fetalliver | 13.45 | |
| Fetallung | 11.25 | |
| GlobusPallidus | 9.75 | |
| Heart | 24.9 | |
| Hypothalamus | 14.7 | |
| Kidney | 10.15 | |
| Leukemia_chronicMyelogenousK-562 | 12.15 | |
| Leukemia_promyelocytic-HL-60 | 11.9 | |
| Leukemialymphoblastic(MOLT-4) | 23.6 | |
| Liver | 23.25 | |
| Lung | 20.7 | |
| Lymphnode | 11.75 | |
| Lymphoma_burkitts(Daudi) | 28.85 | |
| Lymphoma_burkitts(Raji) | 18.65 | |
| MedullaOblongata | 12.1 | |
| OccipitalLobe | 11.95 | |
| OlfactoryBulb | 9.5 | |
| Ovary | 8.35 | |
| Pancreas | 10.8 | |
| PancreaticIslet | 13.95 | |
| ParietalLobe | 12.6 | |
| Pituitary | 17.25 | |
| Placenta | 13.9 | |
| Pons | 10.5 | |
| PrefrontalCortex | 17.1 | |
| Prostate | 15.75 | |
| Salivarygland | 9.8 | |
| SkeletalMuscle | 15.05 | |
| Skin | 9.65 | |
| SmoothMuscle | 15.3 | |
| Spinalcord | 17.85 | |
| SubthalamicNucleus | 13.95 | |
| SuperiorCervicalGanglion | 15.7 | |
| TemporalLobe | 11 | |
| Testis | 17.75 | |
| TestisGermCell | 16.45 | |
| TestisIntersitial | 17.25 | |
| TestisLeydigCell | 25 | |
| TestisSeminiferousTubule | 19.1 | |
| Thalamus | 13.7 | |
| Thymus | 18.8 | |
| Thyroid | 20.85 | |
| Tongue | 12.85 | |
| Tonsil | 13.1 | |
| Trachea | 11.2 | |
| TrigeminalGanglion | 10.1 | |
| Uterus | 17.6 | |
| UterusCorpus | 12.7 | |
| WholeBlood | 15.4 | |
| Wholebrain | 17.65 | |
| colon | 11.6 | |
| pineal_day | 15.36 | |
| pineal_night | 16.34 | |
| retina | 16.025 | |
| small_intestine | 8.9 | |
- Probe name: CUST_13062_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.68 ± 0.97 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.32 ± 0.38 | |
| Basal Part of Pons | 3.37 ± 0.68 | |
| Cerebellar Cortex | 3.54 ± 0.68 | |
| Cerebellar Nuclei | 3.45 ± 0.44 | |
| Claustrum | 4.03 ± 0.61 | |
| Epithalamus | 3.17 ± 0.65 | |
| Frontal Lobe | 3.33 ± 0.62 | |
| Globus Pallidus | 3.73 ± 0.63 | |
| Hypothalamus | 3.29 ± 0.49 | |
| Insula | 3.29 ± 0.77 | |
| Limbic Lobe | 3.49 ± 0.69 | |
| Mesencephalon | 3.5 ± 0.68 | |
| Myelencephalon | 3.46 ± 0.68 | |
| Occipital Lobe | 3.77 ± 0.63 | |
| Parietal Lobe | 3.54 ± 0.6 | |
| Pontine Tegmentum | 3.59 ± 0.74 | |
| Striatum | 3.53 ± 0.85 | |
| Subthalamus | 3.48 ± 0.27 | |
| Temporal Lobe | 3.39 ± 0.62 | |
| Thalamus | 3.39 ± 0.62 | |
| White Matter | 3.79 ± 0.28 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Hirip3 | CB | Cerebellum | 46.37 | |
| 58.51 | | |||
| Hirip3 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Hirip3 | HIP | Hippocampal region | 67.11 | |
| 100 | | |||
| Hirip3 | HPF | Hippocampal formation | 82 | |
| 100 | | |||
| Hirip3 | HY | Hypothalamus | 100 | |
| 92.18 | | |||
| Hirip3 | LSX | Lateral septal complex | 95.31 | |
| 72.98 | | |||
| Hirip3 | MB | Midbrain | 85.55 | |
| 81.46 | | |||
| Hirip3 | MY | Medulla | 82.36 | |
| 96.71 | | |||
| Hirip3 | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| Hirip3 | P | Pons | 81.66 | |
| 91.28 | | |||
| Hirip3 | PAL | Pallidum | 98.41 | |
| 100 | | |||
| Hirip3 | RHP | Retrohippocampal region | 100 | |
| 99.78 | | |||
| Hirip3 | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 100 | | |||
| Hirip3 | STR | Striatum | 100 | |
| 100 | | |||
| Hirip3 | STRd | Striatum dorsal region | 100 | |
| 100 | | |||
| Hirip3 | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| Hirip3 | TH | Thalamus | 93.1 | |
| 83.93 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| HIRP3_HUMAN_40 | 13 | 40 | 52 | SHLEPEEKQALKR | PRIDE |
| PAp00068848 | 14 | 17 | 30 | GRPDLSTLTHSIVR | Peptide Atlas |