Annotation Detail for AGPAT9
Basic Information Top
| Gene Symbol: | AGPAT9 ( AGPAT8,GPAT3,LPAAT-theta,MAG1,MGC11324 ) |
|---|---|
| Gene Full Name: | 1-acylglycerol-3-phosphate O-acyltransferase 9 |
| Band: | 4q21.23 |
| Quick Links | Entrez ID:84803; OMIM: 610958; Uniprot ID:GPAT3_HUMAN; ENSEMBL ID: ENSG00000138678; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.99196
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 2 / 564012 | 3 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 20 / 1939121 | 10 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 2 / 17290 | 115 |  |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 5 / 95842 | 52 | |
| liver tumor | 5 / 96359 | 51 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 62 / 3360307 | 18 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 4 / 123478 | 32 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 7 / 1100989 | 6 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 0 / 211054 | 0 | |
| heart | 1 / 89626 | 11 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 34 / 211777 | 160 | |
| larynx | 0 / 24145 | 0 | |
| liver | 5 / 207743 | 24 | |
| lung | 6 / 336974 | 17 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 2 / 96619 | 20 | |
| testis | 6 / 330442 | 18 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_15447_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.74 ± 0.81 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.47 ± 0.9 | |
| Basal Part of Pons | 6.42 ± 0.42 | |
| Cerebellar Cortex | 5.49 ± 0.63 | |
| Cerebellar Nuclei | 7.35 ± 0.49 | |
| Claustrum | 4.2 ± 0.63 | |
| Epithalamus | 4.35 ± 1.07 | |
| Frontal Lobe | 4.93 ± 1.12 | |
| Globus Pallidus | 6.6 ± 0.55 | |
| Hypothalamus | 5.31 ± 0.63 | |
| Insula | 4.04 ± 1.05 | |
| Limbic Lobe | 4.36 ± 0.97 | |
| Mesencephalon | 5.3 ± 1.01 | |
| Myelencephalon | 5.13 ± 1.17 | |
| Occipital Lobe | 6.44 ± 0.76 | |
| Parietal Lobe | 5.63 ± 0.8 | |
| Pontine Tegmentum | 5.32 ± 0.85 | |
| Striatum | 3.24 ± 0.87 | |
| Subthalamus | 6.3 ± 0.29 | |
| Temporal Lobe | 4.97 ± 0.93 | |
| Thalamus | 6.02 ± 1.09 | |
| White Matter | 3.2 ± 1.01 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| A230097K15Rik | CB | Cerebellum | 0.82 | |
| 1.5 | | |||
| A230097K15Rik | CTX | Cerebral cortex | 0.93 | |
| 1.52 | | |||
| A230097K15Rik | HIP | Hippocampal region | 0.37 | |
| 0.56 | | |||
| A230097K15Rik | HPF | Hippocampal formation | 0.34 | |
| 0.48 | | |||
| A230097K15Rik | HY | Hypothalamus | 0.32 | |
| 0.58 | | |||
| A230097K15Rik | LSX | Lateral septal complex | 0.77 | |
| 0.58 | | |||
| A230097K15Rik | MB | Midbrain | 0.49 | |
| 0.7 | | |||
| A230097K15Rik | MY | Medulla | 0.53 | |
| 0.68 | | |||
| A230097K15Rik | OLF | Olfactory bulb | 0.5 | |
| 1.16 | | |||
| A230097K15Rik | P | Pons | 0.42 | |
| 0.6 | | |||
| A230097K15Rik | PAL | Pallidum | 0.51 | |
| 1.01 | | |||
| A230097K15Rik | RHP | Retrohippocampal region | 0.27 | |
| 0.35 | | |||
| A230097K15Rik | sAMY | Striatum-like amygdalar nuclei | 0.29 | |
| 0.37 | | |||
| A230097K15Rik | STR | Striatum | 0.33 | |
| 0.37 | | |||
| A230097K15Rik | STRd | Striatum dorsal region | 0.32 | |
| 0.37 | | |||
| A230097K15Rik | STRv | Striatum ventral region | 0.31 | |
| 0.4 | | |||
| A230097K15Rik | TH | Thalamus | 0.65 | |
| 0.89 | |