Annotation Detail for RTN4IP1
Basic Information Top
| Gene Symbol: | RTN4IP1 ( MGC12934,NIMP ) |
|---|---|
| Gene Full Name: | reticulon 4 interacting protein 1 |
| Band: | 6q21 |
| Quick Links | Entrez ID:84816; OMIM: 610502; Uniprot ID:RT4I1_HUMAN; ENSEMBL ID: ENSG00000130347; HGNC ID: 18647 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.155839
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 5 / 564012 | 8 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 34 / 1939121 | 17 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 41 / 3360307 | 12 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 9 / 102680 | 87 |  |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 7 / 125191 | 55 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 10 / 1100989 | 9 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 8 / 149255 | 53 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 8 / 336974 | 23 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 4 / 96619 | 41 | |
| testis | 10 / 330442 | 30 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 5 / 16999 | 294 |  |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_1122_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.59 ± 0.58 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.17 ± 0.48 | |
| Basal Part of Pons | 4.38 ± 0.33 | |
| Cerebellar Cortex | 4.95 ± 0.22 | |
| Cerebellar Nuclei | 4.3 ± 0.45 | |
| Claustrum | 4.23 ± 0.69 | |
| Epithalamus | 4.98 ± 0.42 | |
| Frontal Lobe | 4.61 ± 0.42 | |
| Globus Pallidus | 4.2 ± 0.49 | |
| Hypothalamus | 4.42 ± 0.39 | |
| Insula | 4.6 ± 0.41 | |
| Limbic Lobe | 4.48 ± 0.54 | |
| Mesencephalon | 4.66 ± 0.63 | |
| Myelencephalon | 4.47 ± 0.5 | |
| Occipital Lobe | 4.37 ± 0.39 | |
| Parietal Lobe | 4.58 ± 0.5 | |
| Pontine Tegmentum | 4.62 ± 0.51 | |
| Striatum | 4.17 ± 0.52 | |
| Subthalamus | 4.46 ± 0.1 | |
| Temporal Lobe | 4.67 ± 0.41 | |
| Thalamus | 4.42 ± 0.4 | |
| White Matter | 4.21 ± 0.72 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rtn4ip1 | CB | Cerebellum | 4.88 | |
| 6.24 | | |||
| Rtn4ip1 | CTX | Cerebral cortex | 5.27 | |
| 4.19 | | |||
| Rtn4ip1 | HIP | Hippocampal region | 4.41 | |
| 3.89 | | |||
| Rtn4ip1 | HPF | Hippocampal formation | 3.25 | |
| 2.8 | | |||
| Rtn4ip1 | HY | Hypothalamus | 0.57 | |
| 0.52 | | |||
| Rtn4ip1 | LSX | Lateral septal complex | 0.46 | |
| 0.25 | | |||
| Rtn4ip1 | MB | Midbrain | 1.77 | |
| 2.46 | | |||
| Rtn4ip1 | MY | Medulla | 2.79 | |
| 3.64 | | |||
| Rtn4ip1 | OLF | Olfactory bulb | 4.23 | |
| 4.18 | | |||
| Rtn4ip1 | P | Pons | 2.56 | |
| 3.69 | | |||
| Rtn4ip1 | PAL | Pallidum | 0.71 | |
| 0.69 | | |||
| Rtn4ip1 | RHP | Retrohippocampal region | 1.58 | |
| 1.46 | | |||
| Rtn4ip1 | sAMY | Striatum-like amygdalar nuclei | 0.18 | |
| 0.12 | | |||
| Rtn4ip1 | STR | Striatum | 0.76 | |
| 0.64 | | |||
| Rtn4ip1 | STRd | Striatum dorsal region | 0.53 | |
| 0.53 | | |||
| Rtn4ip1 | STRv | Striatum ventral region | 1.77 | |
| 1.2 | | |||
| Rtn4ip1 | TH | Thalamus | 1.59 | |
| 1.75 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00405165 | 14 | 78 | 91 | VHAASVNPIDVNMR | Peptide Atlas |