Annotation Detail for PHF5A
Basic Information Top
| Gene Symbol: | PHF5A ( INI,MGC1346,Rds3,SAP14b,SF3b14b,bK223H9.2 ) |
|---|---|
| Gene Full Name: | PHD finger protein 5A |
| Band: | 22q13.2 |
| Quick Links | Entrez ID:84844; OMIM: NA; Uniprot ID:PHF5A_HUMAN; ENSEMBL ID: ENSG00000100410; HGNC ID: 18000 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.474980
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 5 / 62319 | 80 | |
| fetus | 17 / 564012 | 30 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 42 / 1939121 | 21 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 7 / 106883 | 65 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 8 / 71755 | 111 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 83 / 3360307 | 24 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 11 / 125680 | 87 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 16 / 124949 | 128 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 15 / 1100989 | 13 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 15 / 215722 | 69 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 0 / 89626 | 0 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 14 / 336974 | 41 | |
| lymph | 7 / 44270 | 158 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 24 / 210574 | 113 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 2 / 330442 | 6 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_10031_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.72 ± 0.34 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.64 ± 0.36 | |
| Basal Part of Pons | 5.65 ± 0.44 | |
| Cerebellar Cortex | 6.1 ± 0.21 | |
| Cerebellar Nuclei | 5.59 ± 0.44 | |
| Claustrum | 5.59 ± 0.63 | |
| Epithalamus | 6.77 ± 0.53 | |
| Frontal Lobe | 5.7 ± 0.41 | |
| Globus Pallidus | 6.05 ± 0.46 | |
| Hypothalamus | 5.59 ± 0.33 | |
| Insula | 5.69 ± 0.24 | |
| Limbic Lobe | 5.82 ± 0.41 | |
| Mesencephalon | 5.85 ± 0.46 | |
| Myelencephalon | 5.77 ± 0.44 | |
| Occipital Lobe | 6 ± 0.36 | |
| Parietal Lobe | 5.8 ± 0.4 | |
| Pontine Tegmentum | 5.77 ± 0.37 | |
| Striatum | 5.76 ± 0.38 | |
| Subthalamus | 5.38 ± 0.34 | |
| Temporal Lobe | 5.79 ± 0.36 | |
| Thalamus | 5.74 ± 0.32 | |
| White Matter | 7.09 ± 0.2 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Phf5a | CB | Cerebellum | 65.77 | |
| 96.42 | | |||
| Phf5a | CTX | Cerebral cortex | 77.7 | |
| 66.17 | | |||
| Phf5a | HIP | Hippocampal region | 44.44 | |
| 78.95 | | |||
| Phf5a | HPF | Hippocampal formation | 46.28 | |
| 61.96 | | |||
| Phf5a | HY | Hypothalamus | 32.14 | |
| 28.67 | | |||
| Phf5a | LSX | Lateral septal complex | 80.24 | |
| 69.5 | | |||
| Phf5a | MB | Midbrain | 22.9 | |
| 24.15 | | |||
| Phf5a | MY | Medulla | 30.71 | |
| 36.56 | | |||
| Phf5a | OLF | Olfactory bulb | 55.88 | |
| 52.63 | | |||
| Phf5a | P | Pons | 25.35 | |
| 29.99 | | |||
| Phf5a | PAL | Pallidum | 32.48 | |
| 33.01 | | |||
| Phf5a | RHP | Retrohippocampal region | 49.11 | |
| 43.37 | | |||
| Phf5a | sAMY | Striatum-like amygdalar nuclei | 10.99 | |
| 9.03 | | |||
| Phf5a | STR | Striatum | 26.5 | |
| 22.98 | | |||
| Phf5a | STRd | Striatum dorsal region | 19.01 | |
| 16.96 | | |||
| Phf5a | STRv | Striatum ventral region | 39.96 | |
| 32.32 | | |||
| Phf5a | TH | Thalamus | 42.3 | |
| 44.59 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00001452 | 16 | 58 | 73 | CVICGGPGVSDAYYCK | Peptide Atlas |
| PHF5A_HUMAN_2 | 11 | 2 | 12 | AKHHPDLIFCR | PRIDE |
| PHF5A_HUMAN_96 | 7 | 96 | 102 | TDLFYER | PRIDE |