Annotation Detail for HAVCR2
Basic Information Top
| Gene Symbol: | HAVCR2 ( FLJ14428,KIM-3,TIM3,TIMD3,Tim-3 ) |
|---|---|
| Gene Full Name: | hepatitis A virus cellular receptor 2 |
| Band: | 5q33.3 |
| Quick Links | Entrez ID:84868; OMIM: 606652; Uniprot ID:TIMD3_HUMAN; ENSEMBL ID: ENSG00000135077; HGNC ID: 18437 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.710500
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 2 / 564012 | 3 |  |
| neonate | 15 / 31097 | 482 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 23 / 1939121 | 11 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 13 / 97250 | 133 |  |
| normal | 92 / 3360307 | 27 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 25 / 123478 | 202 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 19 / 1100989 | 17 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 17 / 149255 | 113 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 1 / 89626 | 11 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 12 / 211777 | 56 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 10 / 336974 | 29 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 4 / 41328 | 96 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 7 / 53952 | 129 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 8 / 81131 | 98 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 0 / 51780 | 0 |
- Probe name: A_24_P923370
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.19 ± 0.96 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.53 ± 0.59 | |
| Basal Part of Pons | 4.89 ± 0.39 | |
| Cerebellar Cortex | 3.86 ± 0.45 | |
| Cerebellar Nuclei | 5.3 ± 0.59 | |
| Claustrum | 4.26 ± 0.81 | |
| Epithalamus | 5.11 ± 0.6 | |
| Frontal Lobe | 4.25 ± 0.66 | |
| Globus Pallidus | 6.23 ± 0.31 | |
| Hypothalamus | 4.37 ± 1.19 | |
| Insula | 4.56 ± 0.57 | |
| Limbic Lobe | 4.33 ± 0.73 | |
| Mesencephalon | 4.41 ± 0.74 | |
| Myelencephalon | 4.43 ± 0.77 | |
| Occipital Lobe | 3.93 ± 0.68 | |
| Parietal Lobe | 4.34 ± 0.63 | |
| Pontine Tegmentum | 4.14 ± 0.79 | |
| Striatum | 4.84 ± 0.51 | |
| Subthalamus | 4.58 ± 0.16 | |
| Temporal Lobe | 4.42 ± 0.65 | |
| Thalamus | 4.43 ± 0.56 | |
| White Matter | 6.48 ± 0.57 | |
Mouse Brain ISH 
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00803840 | 8 | 82 | 89 | YWLNGDFR | Peptide Atlas |