Annotation Detail for ATAD1
Basic Information Top
| Gene Symbol: | ATAD1 ( AFDC1,FLJ14600 ) |
|---|---|
| Gene Full Name: | ATPase family, AAA domain containing 1 |
| Band: | 10q23.31 |
| Quick Links | Entrez ID:84896; OMIM: NA; Uniprot ID:ATAD1_HUMAN; ENSEMBL ID: ENSG00000138138; HGNC ID: 25903 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.435948
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 4 / 62319 | 64 | |
| fetus | 33 / 564012 | 58 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 |  |
| adult | 85 / 1939121 | 43 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 3 / 12794 | 234 |  |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 210 / 3360307 | 62 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 2 / 29757 | 67 | |
| blood | 2 / 123478 | 16 | |
| bone | 6 / 71655 | 83 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 57 / 1100989 | 51 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 6 / 149255 | 40 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 14 / 215722 | 64 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 10 / 211054 | 47 | |
| heart | 6 / 89626 | 66 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 11 / 211777 | 51 | |
| larynx | 1 / 24145 | 41 | |
| liver | 14 / 207743 | 67 | |
| lung | 9 / 336974 | 26 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 12 / 91610 | 130 | |
| mammary gland | 7 / 153271 | 45 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 7 / 41328 | 169 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 14 / 280825 | 49 | |
| prostate | 16 / 189345 | 84 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 6 / 210574 | 28 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 3 / 96619 | 31 | |
| testis | 13 / 330442 | 39 | |
| thymus | 7 / 81131 | 86 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 9 / 52413 | 171 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P329777
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.02 ± 0.2 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.01 ± 0.09 | |
| Basal Part of Pons | 8.15 ± 0.19 | |
| Cerebellar Cortex | 8 ± 0.25 | |
| Cerebellar Nuclei | 8.18 ± 0.28 | |
| Claustrum | 8.09 ± 0.35 | |
| Epithalamus | 7.83 ± 0.15 | |
| Frontal Lobe | 7.9 ± 0.24 | |
| Globus Pallidus | 8.2 ± 0.2 | |
| Hypothalamus | 7.98 ± 0.24 | |
| Insula | 7.82 ± 0.35 | |
| Limbic Lobe | 8.1 ± 0.26 | |
| Mesencephalon | 8.06 ± 0.33 | |
| Myelencephalon | 7.96 ± 0.25 | |
| Occipital Lobe | 8.24 ± 0.28 | |
| Parietal Lobe | 8.04 ± 0.21 | |
| Pontine Tegmentum | 7.99 ± 0.23 | |
| Striatum | 8.09 ± 0.26 | |
| Subthalamus | 7.86 ± 0.24 | |
| Temporal Lobe | 7.92 ± 0.21 | |
| Thalamus | 7.95 ± 0.23 | |
| White Matter | 7.8 ± 0.16 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Atad1 | CB | Cerebellum | 20.47 | |
| 46.06 | | |||
| Atad1 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Atad1 | HIP | Hippocampal region | 74.19 | |
| 100 | | |||
| Atad1 | HPF | Hippocampal formation | 87.69 | |
| 100 | | |||
| Atad1 | HY | Hypothalamus | 43.01 | |
| 46.51 | | |||
| Atad1 | LSX | Lateral septal complex | 48.35 | |
| 47.42 | | |||
| Atad1 | MB | Midbrain | 24.08 | |
| 33.93 | | |||
| Atad1 | MY | Medulla | 15 | |
| 27.6 | | |||
| Atad1 | OLF | Olfactory bulb | 56.83 | |
| 65.44 | | |||
| Atad1 | P | Pons | 21.38 | |
| 37.54 | | |||
| Atad1 | PAL | Pallidum | 43.33 | |
| 54.68 | | |||
| Atad1 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Atad1 | sAMY | Striatum-like amygdalar nuclei | 40.88 | |
| 39.74 | | |||
| Atad1 | STR | Striatum | 39.12 | |
| 36.83 | | |||
| Atad1 | STRd | Striatum dorsal region | 39.16 | |
| 36.37 | | |||
| Atad1 | STRv | Striatum ventral region | 34.37 | |
| 34.33 | | |||
| Atad1 | TH | Thalamus | 46.16 | |
| 56.18 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| ATAD1_HUMAN_39 | 7 | 39 | 45 | DAIDPTR | PRIDE |
| PAp00002305 | 26 | 313 | 338 | EYVNSTSEESHDEDEIRPVQQQDLHR | Peptide Atlas |