Annotation Detail for PLXDC2
Basic Information Top
| Gene Symbol: | PLXDC2 ( FLJ14623,TEM7R ) |
|---|---|
| Gene Full Name: | plexin domain containing 2 |
| Band: | 10p12.31 |
| Quick Links | Entrez ID:84898; OMIM: 606827; Uniprot ID:PXDC2_HUMAN; ENSEMBL ID: ENSG00000120594; HGNC ID: 21013 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.658134
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 9 / 564012 | 15 | |
| neonate | 2 / 31097 | 64 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 3 / 55556 | 53 | |
| adult | 32 / 1939121 | 16 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 46 / 3360307 | 13 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 7 / 1100989 | 6 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 4 / 89626 | 44 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 1 / 24145 | 41 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 3 / 15768 | 190 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 4 / 330442 | 12 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P161424
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.53 ± 0.37 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.8 ± 0.44 | |
| Basal Part of Pons | 8.07 ± 0.28 | |
| Cerebellar Cortex | 7.44 ± 0.21 | |
| Cerebellar Nuclei | 7.64 ± 0.16 | |
| Claustrum | 7.85 ± 0.41 | |
| Epithalamus | 8.34 ± 0.33 | |
| Frontal Lobe | 7.66 ± 0.4 | |
| Globus Pallidus | 8.73 ± 0.3 | |
| Hypothalamus | 7.82 ± 0.28 | |
| Insula | 7.91 ± 0.46 | |
| Limbic Lobe | 7.88 ± 0.45 | |
| Mesencephalon | 7.78 ± 0.44 | |
| Myelencephalon | 7.76 ± 0.43 | |
| Occipital Lobe | 7.83 ± 0.34 | |
| Parietal Lobe | 7.52 ± 0.35 | |
| Pontine Tegmentum | 7.59 ± 0.32 | |
| Striatum | 7.98 ± 0.38 | |
| Subthalamus | 8.21 ± 0.24 | |
| Temporal Lobe | 7.72 ± 0.38 | |
| Thalamus | 8 ± 0.43 | |
| White Matter | 8.47 ± 0.28 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Plxdc2 | CB | Cerebellum | 23.36 | |
| 42.02 | | |||
| Plxdc2 | CTX | Cerebral cortex | 16.56 | |
| 12.31 | | |||
| Plxdc2 | HIP | Hippocampal region | 13.55 | |
| 13.93 | | |||
| Plxdc2 | HPF | Hippocampal formation | 22.43 | |
| 22.53 | | |||
| Plxdc2 | HY | Hypothalamus | 16.93 | |
| 14.27 | | |||
| Plxdc2 | LSX | Lateral septal complex | 22.63 | |
| 18.31 | | |||
| Plxdc2 | MB | Midbrain | 15.67 | |
| 14.04 | | |||
| Plxdc2 | MY | Medulla | 12.83 | |
| 13.07 | | |||
| Plxdc2 | OLF | Olfactory bulb | 22.65 | |
| 18.07 | | |||
| Plxdc2 | P | Pons | 11.29 | |
| 10.99 | | |||
| Plxdc2 | PAL | Pallidum | 12.59 | |
| 10.73 | | |||
| Plxdc2 | RHP | Retrohippocampal region | 35.12 | |
| 32.16 | | |||
| Plxdc2 | sAMY | Striatum-like amygdalar nuclei | 17.92 | |
| 14.08 | | |||
| Plxdc2 | STR | Striatum | 9.34 | |
| 6.87 | | |||
| Plxdc2 | STRd | Striatum dorsal region | 7.24 | |
| 5.15 | | |||
| Plxdc2 | STRv | Striatum ventral region | 7.05 | |
| 4.72 | | |||
| Plxdc2 | TH | Thalamus | 23.52 | |
| 20.26 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00045344 | 29 | 91 | 119 | SFTDLLLDDGQDNNTQIEEDTDHNYYISR | Peptide Atlas |