Annotation Detail for RAB2B
Basic Information Top
| Gene Symbol: | RAB2B ( FLJ14824 ) |
|---|---|
| Gene Full Name: | RAB2B, member RAS oncogene family |
| Band: | 14q11.2 |
| Quick Links | Entrez ID:84932; OMIM: 607466; Uniprot ID:RAB2B_HUMAN; ENSEMBL ID: ENSG00000129472; HGNC ID: 20246 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.22399
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 12 / 564012 | 21 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 70 / 1939121 | 36 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 105 / 3360307 | 31 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 3 / 123478 | 24 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 38 / 1100989 | 34 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 9 / 215722 | 41 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 2 / 89626 | 22 | |
| intestine | 7 / 234472 | 29 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 1 / 24145 | 41 | |
| liver | 5 / 207743 | 24 | |
| lung | 10 / 336974 | 29 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 8 / 280825 | 28 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 6 / 210574 | 28 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 11 / 330442 | 33 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_1376_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.13 ± 0.43 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.03 ± 0.35 | |
| Basal Part of Pons | 7.26 ± 0.21 | |
| Cerebellar Cortex | 7.07 ± 0.29 | |
| Cerebellar Nuclei | 7.16 ± 0.41 | |
| Claustrum | 7.05 ± 0.42 | |
| Epithalamus | 6.88 ± 0.47 | |
| Frontal Lobe | 7.19 ± 0.4 | |
| Globus Pallidus | 6.93 ± 0.29 | |
| Hypothalamus | 7.44 ± 0.4 | |
| Insula | 7.08 ± 0.43 | |
| Limbic Lobe | 7.09 ± 0.48 | |
| Mesencephalon | 7.13 ± 0.34 | |
| Myelencephalon | 7.05 ± 0.41 | |
| Occipital Lobe | 7.05 ± 0.4 | |
| Parietal Lobe | 7.16 ± 0.38 | |
| Pontine Tegmentum | 7.16 ± 0.38 | |
| Striatum | 7.13 ± 0.4 | |
| Subthalamus | 7.19 ± 0.38 | |
| Temporal Lobe | 7.08 ± 0.46 | |
| Thalamus | 7.12 ± 0.28 | |
| White Matter | 7.47 ± 0.32 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rab2b | CB | Cerebellum | 1.25 | |
| 1.47 | | |||
| Rab2b | CTX | Cerebral cortex | 0.49 | |
| 0.46 | | |||
| Rab2b | HIP | Hippocampal region | 0.71 | |
| 0.75 | | |||
| Rab2b | HPF | Hippocampal formation | 0.7 | |
| 0.74 | | |||
| Rab2b | HY | Hypothalamus | 0.05 | |
| 0.04 | | |||
| Rab2b | LSX | Lateral septal complex | 0.06 | |
| 0.13 | | |||
| Rab2b | MB | Midbrain | 0.32 | |
| 0.44 | | |||
| Rab2b | MY | Medulla | 2.13 | |
| 2.59 | | |||
| Rab2b | OLF | Olfactory bulb | 1.62 | |
| 2.23 | | |||
| Rab2b | P | Pons | 1.73 | |
| 2.29 | | |||
| Rab2b | PAL | Pallidum | 0.42 | |
| 0.36 | | |||
| Rab2b | RHP | Retrohippocampal region | 0.68 | |
| 0.74 | | |||
| Rab2b | sAMY | Striatum-like amygdalar nuclei | 0.36 | |
| 0.25 | | |||
| Rab2b | STR | Striatum | 0.21 | |
| 0.19 | | |||
| Rab2b | STRd | Striatum dorsal region | 0.19 | |
| 0.18 | | |||
| Rab2b | STRv | Striatum ventral region | 0.27 | |
| 0.22 | | |||
| Rab2b | TH | Thalamus | 0.18 | |
| 0.12 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00002050 | 12 | 140 | 151 | EHGLIFMETSAK | Peptide Atlas |
| RAB2B_HUMAN_19 | 11 | 19 | 29 | SCLLLQFTDKR | PRIDE |
| RAB2B_HUMAN_56 | 13 | 56 | 68 | LQIWDTAGQESFR | PRIDE |
| RAB2B_HUMAN_77 | 14 | 77 | 90 | GAAGALLVYDITRR | PRIDE |
| RAB2B_HUMAN_8 | 11 | 8 | 18 | YIIIGDTGVGK | PRIDE |