Annotation Detail for CORO6
Basic Information Top
| Gene Symbol: | CORO6 ( FLJ14871 ) |
|---|---|
| Gene Full Name: | coronin 6 |
| Band: | 17q11.2 |
| Quick Links | Entrez ID:84940; OMIM: NA; Uniprot ID:CORO6_HUMAN; ENSEMBL ID: ENSG00000167549; HGNC ID: 21356 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.143046
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 9 / 564012 | 15 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 58 / 1939121 | 29 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 5 / 94178 | 53 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 80 / 3360307 | 23 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 24 / 1100989 | 21 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 2 / 89626 | 22 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 3 / 24145 | 124 | |
| liver | 1 / 207743 | 4 | |
| lung | 5 / 336974 | 14 | |
| lymph | 3 / 44270 | 67 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 9 / 107715 | 83 | |
| nerve | 3 / 15768 | 190 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 25 / 280825 | 89 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_5124_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.03 ± 0.47 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.94 ± 0.57 | |
| Basal Part of Pons | 5.52 ± 0.5 | |
| Cerebellar Cortex | 4.42 ± 0.6 | |
| Cerebellar Nuclei | 4.45 ± 0.64 | |
| Claustrum | 5.11 ± 0.77 | |
| Epithalamus | 3.81 ± 0.71 | |
| Frontal Lobe | 4.82 ± 0.65 | |
| Globus Pallidus | 4.19 ± 1.12 | |
| Hypothalamus | 4.76 ± 0.55 | |
| Insula | 4.82 ± 0.56 | |
| Limbic Lobe | 5.14 ± 0.63 | |
| Mesencephalon | 4.8 ± 0.55 | |
| Myelencephalon | 4.89 ± 0.75 | |
| Occipital Lobe | 5.61 ± 0.63 | |
| Parietal Lobe | 5.27 ± 0.61 | |
| Pontine Tegmentum | 4.75 ± 0.75 | |
| Striatum | 4.89 ± 0.58 | |
| Subthalamus | 4.54 ± 0.62 | |
| Temporal Lobe | 4.89 ± 0.75 | |
| Thalamus | 5.21 ± 0.52 | |
| White Matter | 3.05 ± 0.94 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Coro6 | CB | Cerebellum | 45.88 | |
| 43.85 | | |||
| Coro6 | CTX | Cerebral cortex | 55.44 | |
| 46.79 | | |||
| Coro6 | HIP | Hippocampal region | 8.15 | |
| 7.87 | | |||
| Coro6 | HPF | Hippocampal formation | 24.64 | |
| 21.84 | | |||
| Coro6 | HY | Hypothalamus | 19.6 | |
| 13.6 | | |||
| Coro6 | LSX | Lateral septal complex | 3.85 | |
| 2.92 | | |||
| Coro6 | MB | Midbrain | 43.64 | |
| 35.59 | | |||
| Coro6 | MY | Medulla | 68.38 | |
| 67.17 | | |||
| Coro6 | OLF | Olfactory bulb | 35.66 | |
| 38.17 | | |||
| Coro6 | P | Pons | 51.1 | |
| 45.67 | | |||
| Coro6 | PAL | Pallidum | 44.94 | |
| 41.42 | | |||
| Coro6 | RHP | Retrohippocampal region | 57.56 | |
| 45.27 | | |||
| Coro6 | sAMY | Striatum-like amygdalar nuclei | 17.25 | |
| 12.44 | | |||
| Coro6 | STR | Striatum | 7.61 | |
| 6.01 | | |||
| Coro6 | STRd | Striatum dorsal region | 5.74 | |
| 4.68 | | |||
| Coro6 | STRv | Striatum ventral region | 10.13 | |
| 7.65 | | |||
| Coro6 | TH | Thalamus | 42.58 | |
| 31.95 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00000946 | 10 | 344 | 353 | CEPIIMTVPR | Peptide Atlas |