Annotation Detail for CGNL1
Basic Information Top
| Gene Symbol: | CGNL1 ( FLJ14957,JACOP,KIAA1749,MGC138254 ) |
|---|---|
| Gene Full Name: | cingulin-like 1 |
| Band: | 15q21.3 |
| Quick Links | Entrez ID:84952; OMIM: 607856; Uniprot ID:CGNL1_HUMAN; ENSEMBL ID: ENSG00000128849; HGNC ID: 25931 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.148989
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 5 / 62319 | 80 |  |
| fetus | 30 / 564012 | 53 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 66 / 1939121 | 34 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 109 / 3360307 | 32 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 9 / 1100989 | 8 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 5 / 89626 | 55 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 13 / 211777 | 61 | |
| larynx | 0 / 24145 | 0 | |
| liver | 6 / 207743 | 28 | |
| lung | 9 / 336974 | 26 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 17 / 280825 | 60 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 1 / 96619 | 10 | |
| testis | 12 / 330442 | 36 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 8 / 47473 | 168 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_24_P135319
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.89 ± 0.4 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.16 ± 0.48 | |
| Basal Part of Pons | 6.24 ± 0.33 | |
| Cerebellar Cortex | 6.37 ± 0.22 | |
| Cerebellar Nuclei | 7.35 ± 0.39 | |
| Claustrum | 7.07 ± 0.43 | |
| Epithalamus | 7.18 ± 0.38 | |
| Frontal Lobe | 6.75 ± 0.49 | |
| Globus Pallidus | 8.38 ± 0.46 | |
| Hypothalamus | 6.91 ± 0.35 | |
| Insula | 6.68 ± 0.53 | |
| Limbic Lobe | 6.6 ± 0.61 | |
| Mesencephalon | 7.12 ± 0.54 | |
| Myelencephalon | 6.99 ± 0.54 | |
| Occipital Lobe | 7.05 ± 0.55 | |
| Parietal Lobe | 6.9 ± 0.46 | |
| Pontine Tegmentum | 7.01 ± 0.44 | |
| Striatum | 7.51 ± 0.43 | |
| Subthalamus | 7.03 ± 0.64 | |
| Temporal Lobe | 6.7 ± 0.39 | |
| Thalamus | 7.11 ± 0.4 | |
| White Matter | 7.37 ± 0.44 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cgnl1 | CB | Cerebellum | 7.79 | |
| 9.44 | | |||
| Cgnl1 | CTX | Cerebral cortex | 12.92 | |
| 9.03 | | |||
| Cgnl1 | HIP | Hippocampal region | 10.01 | |
| 9.84 | | |||
| Cgnl1 | HPF | Hippocampal formation | 12.22 | |
| 10.93 | | |||
| Cgnl1 | HY | Hypothalamus | 6.75 | |
| 5.52 | | |||
| Cgnl1 | LSX | Lateral septal complex | 3.85 | |
| 2.83 | | |||
| Cgnl1 | MB | Midbrain | 11.49 | |
| 13.51 | | |||
| Cgnl1 | MY | Medulla | 14.71 | |
| 24.15 | | |||
| Cgnl1 | OLF | Olfactory bulb | 9.32 | |
| 7.93 | | |||
| Cgnl1 | P | Pons | 15.26 | |
| 20.87 | | |||
| Cgnl1 | PAL | Pallidum | 6.95 | |
| 8.08 | | |||
| Cgnl1 | RHP | Retrohippocampal region | 17.86 | |
| 13.95 | | |||
| Cgnl1 | sAMY | Striatum-like amygdalar nuclei | 8.68 | |
| 8.34 | | |||
| Cgnl1 | STR | Striatum | 5.02 | |
| 4.75 | | |||
| Cgnl1 | STRd | Striatum dorsal region | 3.89 | |
| 3.7 | | |||
| Cgnl1 | STRv | Striatum ventral region | 6.21 | |
| 5.69 | | |||
| Cgnl1 | TH | Thalamus | 11.12 | |
| 12.24 | |