Annotation Detail for NUDCD1
Basic Information Top
| Gene Symbol: | NUDCD1 ( CML66,FLJ14991,OVA66 ) |
|---|---|
| Gene Full Name: | NudC domain containing 1 |
| Band: | 8q23.1 |
| Quick Links | Entrez ID:84955; OMIM: 606109; Uniprot ID:NUDC1_HUMAN; ENSEMBL ID: ENSG00000120526; HGNC ID: 24306 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.380291
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 4 / 62319 | 64 | |
| fetus | 14 / 564012 | 24 |  |
| neonate | 1 / 31097 | 32 | |
| infant | 3 / 23620 | 127 | |
| juvenile | 4 / 55556 | 71 | |
| adult | 65 / 1939121 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 8 / 94178 | 84 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 8 / 119369 | 67 | |
| germ cell tumor | 19 / 263845 | 72 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 5 / 96359 | 51 | |
| lung tumor | 5 / 103127 | 48 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 115 / 3360307 | 34 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 12 / 125680 | 95 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 5 / 40015 | 124 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 33 / 1100989 | 29 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 11 / 149255 | 73 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 11 / 215722 | 50 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 2 / 89626 | 22 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 13 / 211777 | 61 | |
| larynx | 0 / 24145 | 0 | |
| liver | 7 / 207743 | 33 | |
| lung | 10 / 336974 | 29 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 12 / 153271 | 78 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 17 / 280825 | 60 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 10 / 210574 | 47 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 3 / 96619 | 31 | |
| testis | 26 / 330442 | 78 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 9 / 52413 | 171 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 12 / 232878 | 51 | |
| vascular | 3 / 51780 | 57 | |
Microarray in - Probe name: A_23_P123343
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.79 ± 0.5 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7 ± 0.16 | |
| Basal Part of Pons | 7.11 ± 0.31 | |
| Cerebellar Cortex | 7.38 ± 0.16 | |
| Cerebellar Nuclei | 7.02 ± 0.33 | |
| Claustrum | 6.8 ± 0.41 | |
| Epithalamus | 7.03 ± 0.25 | |
| Frontal Lobe | 7.23 ± 0.29 | |
| Globus Pallidus | 6.34 ± 0.2 | |
| Hypothalamus | 7.35 ± 0.27 | |
| Insula | 7.44 ± 0.18 | |
| Limbic Lobe | 7.19 ± 0.43 | |
| Mesencephalon | 7.07 ± 0.41 | |
| Myelencephalon | 7.08 ± 0.43 | |
| Occipital Lobe | 6.86 ± 0.39 | |
| Parietal Lobe | 7.09 ± 0.36 | |
| Pontine Tegmentum | 7.09 ± 0.37 | |
| Striatum | 6.6 ± 0.41 | |
| Subthalamus | 7.16 ± 0.15 | |
| Temporal Lobe | 7.32 ± 0.32 | |
| Thalamus | 6.97 ± 0.36 | |
| White Matter | 6.78 ± 0.27 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Nudcd1 | CB | Cerebellum | 2.5 | |
| 2.21 | | |||
| Nudcd1 | CTX | Cerebral cortex | 2.36 | |
| 1.15 | | |||
| Nudcd1 | HIP | Hippocampal region | 2.98 | |
| 2.24 | | |||
| Nudcd1 | HPF | Hippocampal formation | 2.24 | |
| 1.47 | | |||
| Nudcd1 | HY | Hypothalamus | 0.68 | |
| 0.24 | | |||
| Nudcd1 | LSX | Lateral septal complex | 0.72 | |
| 0.63 | | |||
| Nudcd1 | MB | Midbrain | 1.91 | |
| 1.25 | | |||
| Nudcd1 | MY | Medulla | 11.03 | |
| 5.71 | | |||
| Nudcd1 | OLF | Olfactory bulb | 1.54 | |
| 2.03 | | |||
| Nudcd1 | P | Pons | 4.91 | |
| 2.69 | | |||
| Nudcd1 | PAL | Pallidum | 0.86 | |
| 0.42 | | |||
| Nudcd1 | RHP | Retrohippocampal region | 1 | |
| 0.39 | | |||
| Nudcd1 | sAMY | Striatum-like amygdalar nuclei | 0.31 | |
| 0.18 | | |||
| Nudcd1 | STR | Striatum | 0.67 | |
| 0.56 | | |||
| Nudcd1 | STRd | Striatum dorsal region | 0.79 | |
| 0.71 | | |||
| Nudcd1 | STRv | Striatum ventral region | 0.39 | |
| 0.2 | | |||
| Nudcd1 | TH | Thalamus | 1.15 | |
| 0.55 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00069253 | 14 | 459 | 472 | HDVDALLWQPHSSK | Peptide Atlas |