Annotation Detail for UBASH3B
Basic Information Top
| Gene Symbol: | UBASH3B ( KIAA1959,MGC15437,STS-1,STS1,p70 ) |
|---|---|
| Gene Full Name: | ubiquitin associated and SH3 domain containing B |
| Band: | 11q24.1 |
| Quick Links | Entrez ID:84959; OMIM: 609201; Uniprot ID:UBS3B_HUMAN; ENSEMBL ID: ENSG00000154127; HGNC ID: 29884 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.444075
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 15 / 564012 | 26 |  |
| neonate | 4 / 31097 | 128 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 5 / 55556 | 89 | |
| adult | 65 / 1939121 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 42 / 263845 | 159 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 6 / 68959 | 87 | |
| leukemia | 8 / 95842 | 83 | |
| liver tumor | 13 / 96359 | 134 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 143 / 3360307 | 42 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 7 / 124949 | 56 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 5 / 123478 | 40 | |
| bone | 7 / 71655 | 97 | |
| bone marrow | 5 / 48801 | 102 | |
| brain | 51 / 1100989 | 46 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 30 / 211777 | 141 | |
| larynx | 0 / 24145 | 0 | |
| liver | 16 / 207743 | 77 | |
| lung | 17 / 336974 | 50 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 18 / 280825 | 64 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 16 / 210574 | 75 | |
| spleen | 8 / 53952 | 148 | |
| stomach | 1 / 96619 | 10 | |
| testis | 20 / 330442 | 60 | |
| thymus | 7 / 81131 | 86 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 20 / 232878 | 85 | |
| vascular | 6 / 51780 | 115 | |
Microarray in - Probe name: CUST_607_PI416408490
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.48 ± 0.77 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.96 ± 0.54 | |
| Basal Part of Pons | 4.09 ± 0.31 | |
| Cerebellar Cortex | 3.9 ± 0.42 | |
| Cerebellar Nuclei | 3.78 ± 0.62 | |
| Claustrum | 3.7 ± 0.94 | |
| Epithalamus | 2.75 ± 0.91 | |
| Frontal Lobe | 3.06 ± 0.79 | |
| Globus Pallidus | 2.37 ± 0.82 | |
| Hypothalamus | 3.36 ± 0.34 | |
| Insula | 2.68 ± 0.57 | |
| Limbic Lobe | 3.03 ± 0.71 | |
| Mesencephalon | 3.31 ± 0.75 | |
| Myelencephalon | 3.16 ± 0.79 | |
| Occipital Lobe | 3.29 ± 0.89 | |
| Parietal Lobe | 3.24 ± 0.72 | |
| Pontine Tegmentum | 2.86 ± 0.66 | |
| Striatum | 2.67 ± 0.69 | |
| Subthalamus | 4.24 ± 0.38 | |
| Temporal Lobe | 3.04 ± 0.79 | |
| Thalamus | 2.76 ± 0.84 | |
| White Matter | 2.45 ± 0.45 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 2810457I06Rik | CB | Cerebellum | 69.54 | |
| 100 | | |||
| 2810457I06Rik | CTX | Cerebral cortex | 39.47 | |
| 39.25 | | |||
| 2810457I06Rik | HIP | Hippocampal region | 41.09 | |
| 67.93 | | |||
| 2810457I06Rik | HPF | Hippocampal formation | 38.84 | |
| 52.66 | | |||
| 2810457I06Rik | HY | Hypothalamus | 23.06 | |
| 23.58 | | |||
| 2810457I06Rik | LSX | Lateral septal complex | 3.77 | |
| 3.79 | | |||
| 2810457I06Rik | MB | Midbrain | 24.67 | |
| 27.48 | | |||
| 2810457I06Rik | MY | Medulla | 51.9 | |
| 69.88 | | |||
| 2810457I06Rik | OLF | Olfactory bulb | 68.07 | |
| 75.97 | | |||
| 2810457I06Rik | P | Pons | 38.3 | |
| 52.53 | | |||
| 2810457I06Rik | PAL | Pallidum | 23.09 | |
| 23.74 | | |||
| 2810457I06Rik | RHP | Retrohippocampal region | 36.76 | |
| 35.96 | | |||
| 2810457I06Rik | sAMY | Striatum-like amygdalar nuclei | 24.4 | |
| 22.71 | | |||
| 2810457I06Rik | STR | Striatum | 14.73 | |
| 11.44 | | |||
| 2810457I06Rik | STRd | Striatum dorsal region | 13.95 | |
| 10.25 | | |||
| 2810457I06Rik | STRv | Striatum ventral region | 14.8 | |
| 10.68 | | |||
| 2810457I06Rik | TH | Thalamus | 17.36 | |
| 34.09 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00096542 | 23 | 451 | 473 | LVGEALLESNTIIDHVYCSPSLR | Peptide Atlas |