Annotation Detail for ALKBH6
Basic Information Top
| Gene Symbol: | ALKBH6 ( ABH6,MGC15677 ) |
|---|---|
| Gene Full Name: | alkB, alkylation repair homolog 6 (E. coli) |
| Band: | 19q13.12 |
| Quick Links | Entrez ID:84964; OMIM: 613304; Uniprot ID:ALKB6_HUMAN; ENSEMBL ID: ENSG00000181392,ENSG00000239382; HGNC ID: 28243 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.71941
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 18 / 564012 | 31 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 57 / 1939121 | 29 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 |  |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 11 / 82823 | 132 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 6 / 106883 | 56 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 5 / 95842 | 52 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 86 / 3360307 | 25 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 6 / 40015 | 149 | |
| bladder | 1 / 29757 | 33 | |
| blood | 4 / 123478 | 32 | |
| bone | 7 / 71655 | 97 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 33 / 1100989 | 29 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 8 / 149255 | 53 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 17 / 211054 | 80 | |
| heart | 0 / 89626 | 0 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 6 / 207743 | 28 | |
| lung | 12 / 336974 | 35 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 2 / 330442 | 6 | |
| thymus | 9 / 81131 | 110 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 15 / 232878 | 64 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_12358_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.34 ± 0.46 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.09 ± 0.24 | |
| Basal Part of Pons | 6.62 ± 0.17 | |
| Cerebellar Cortex | 6.07 ± 0.28 | |
| Cerebellar Nuclei | 6.48 ± 0.25 | |
| Claustrum | 6.48 ± 0.47 | |
| Epithalamus | 5.54 ± 0.61 | |
| Frontal Lobe | 6.36 ± 0.32 | |
| Globus Pallidus | 6.05 ± 0.32 | |
| Hypothalamus | 6.31 ± 0.34 | |
| Insula | 6.12 ± 0.24 | |
| Limbic Lobe | 6.38 ± 0.35 | |
| Mesencephalon | 6.24 ± 0.42 | |
| Myelencephalon | 6.3 ± 0.38 | |
| Occipital Lobe | 6.13 ± 0.26 | |
| Parietal Lobe | 6.3 ± 0.36 | |
| Pontine Tegmentum | 6.23 ± 0.29 | |
| Striatum | 6.33 ± 0.3 | |
| Subthalamus | 6.31 ± 0.17 | |
| Temporal Lobe | 6.36 ± 0.3 | |
| Thalamus | 6.44 ± 0.31 | |
| White Matter | 5.99 ± 0.11 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Alkbh6 | CB | Cerebellum | 24.67 | |
| 34.77 | | |||
| Alkbh6 | CTX | Cerebral cortex | 60.99 | |
| 47 | | |||
| Alkbh6 | HIP | Hippocampal region | 34.98 | |
| 44 | | |||
| Alkbh6 | HPF | Hippocampal formation | 47.42 | |
| 50.51 | | |||
| Alkbh6 | HY | Hypothalamus | 38.69 | |
| 32.06 | | |||
| Alkbh6 | LSX | Lateral septal complex | 19.54 | |
| 14.8 | | |||
| Alkbh6 | MB | Midbrain | 44.71 | |
| 41.96 | | |||
| Alkbh6 | MY | Medulla | 57.69 | |
| 65.12 | | |||
| Alkbh6 | OLF | Olfactory bulb | 55.78 | |
| 47.36 | | |||
| Alkbh6 | P | Pons | 49.12 | |
| 52.53 | | |||
| Alkbh6 | PAL | Pallidum | 32.5 | |
| 30.44 | | |||
| Alkbh6 | RHP | Retrohippocampal region | 66.51 | |
| 58.73 | | |||
| Alkbh6 | sAMY | Striatum-like amygdalar nuclei | 29.2 | |
| 22.85 | | |||
| Alkbh6 | STR | Striatum | 20.88 | |
| 15.48 | | |||
| Alkbh6 | STRd | Striatum dorsal region | 17.88 | |
| 13.12 | | |||
| Alkbh6 | STRv | Striatum ventral region | 26.69 | |
| 18.55 | | |||
| Alkbh6 | TH | Thalamus | 34.56 | |
| 28.65 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00497041 | 17 | 44 | 60 | VEQAPPVIYYVPDFISK | Peptide Atlas |