Annotation Detail for USP45
Basic Information Top
| Gene Symbol: | USP45 ( MGC14793 ) |
|---|---|
| Gene Full Name: | ubiquitin specific peptidase 45 |
| Band: | 6q16.2 |
| Quick Links | Entrez ID:85015; OMIM: NA; Uniprot ID:UBP45_HUMAN; ENSEMBL ID: ENSG00000123552; HGNC ID: 20080 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.143410
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 3 / 564012 | 5 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 28 / 1939121 | 14 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 7 / 82823 | 84 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 4 / 71755 | 55 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 48 / 3360307 | 14 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 6 / 125680 | 47 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 8 / 71655 | 111 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 14 / 1100989 | 12 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 3 / 336974 | 8 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 2 / 20155 | 99 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 9 / 330442 | 27 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P134008
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.99 ± 0.74 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.6 ± 0.34 | |
| Basal Part of Pons | 7.42 ± 0.3 | |
| Cerebellar Cortex | 8.13 ± 0.38 | |
| Cerebellar Nuclei | 7.5 ± 0.37 | |
| Claustrum | 7.21 ± 0.56 | |
| Epithalamus | 7.14 ± 0.54 | |
| Frontal Lobe | 7.38 ± 0.51 | |
| Globus Pallidus | 7.41 ± 0.35 | |
| Hypothalamus | 7.45 ± 0.33 | |
| Insula | 7.34 ± 0.41 | |
| Limbic Lobe | 7.49 ± 0.37 | |
| Mesencephalon | 7.71 ± 0.45 | |
| Myelencephalon | 7.42 ± 0.49 | |
| Occipital Lobe | 7.95 ± 0.4 | |
| Parietal Lobe | 7.71 ± 0.4 | |
| Pontine Tegmentum | 7.46 ± 0.56 | |
| Striatum | 7.29 ± 0.52 | |
| Subthalamus | 8.15 ± 0.2 | |
| Temporal Lobe | 7.27 ± 0.47 | |
| Thalamus | 7.66 ± 0.38 | |
| White Matter | 7.33 ± 0.34 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Usp45 | CB | Cerebellum | 17.47 | |
| 33.47 | | |||
| Usp45 | CTX | Cerebral cortex | 62.84 | |
| 53.65 | | |||
| Usp45 | HIP | Hippocampal region | 44.34 | |
| 76.3 | | |||
| Usp45 | HPF | Hippocampal formation | 45.33 | |
| 61.63 | | |||
| Usp45 | HY | Hypothalamus | 12.14 | |
| 11.27 | | |||
| Usp45 | LSX | Lateral septal complex | 11.33 | |
| 8.73 | | |||
| Usp45 | MB | Midbrain | 18.65 | |
| 23.53 | | |||
| Usp45 | MY | Medulla | 13.38 | |
| 23.93 | | |||
| Usp45 | OLF | Olfactory bulb | 37.41 | |
| 33.33 | | |||
| Usp45 | P | Pons | 17.68 | |
| 27.65 | | |||
| Usp45 | PAL | Pallidum | 13.16 | |
| 13.71 | | |||
| Usp45 | RHP | Retrohippocampal region | 47.85 | |
| 44.95 | | |||
| Usp45 | sAMY | Striatum-like amygdalar nuclei | 17.46 | |
| 13.24 | | |||
| Usp45 | STR | Striatum | 27.1 | |
| 20.61 | | |||
| Usp45 | STRd | Striatum dorsal region | 29.16 | |
| 22.05 | | |||
| Usp45 | STRv | Striatum ventral region | 31.99 | |
| 24.26 | | |||
| Usp45 | TH | Thalamus | 38.86 | |
| 40.71 | |