Annotation Detail for REPS1
Basic Information Top
| Gene Symbol: | REPS1 ( RALBP1 ) |
|---|---|
| Gene Full Name: | RALBP1 associated Eps domain containing 1 |
| Band: | 6q24.1 |
| Quick Links | Entrez ID:85021; OMIM: NA; Uniprot ID:REPS1_HUMAN; ENSEMBL ID: ENSG00000135597; HGNC ID: 15578 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.334603
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 17 / 564012 | 30 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 4 / 55556 | 71 | |
| adult | 97 / 1939121 | 50 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 10 / 114246 | 87 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 11 / 263845 | 41 | |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 9 / 136302 | 66 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 7 / 96359 | 72 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 8 / 71755 | 111 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 145 / 3360307 | 43 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 6 / 124949 | 48 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 6 / 48801 | 122 | |
| brain | 32 / 1100989 | 29 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 11 / 215722 | 50 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 2 / 89626 | 22 | |
| intestine | 14 / 234472 | 59 | |
| kidney | 12 / 211777 | 56 | |
| larynx | 0 / 24145 | 0 | |
| liver | 12 / 207743 | 57 | |
| lung | 20 / 336974 | 59 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 14 / 153271 | 91 | |
| mouth | 6 / 67052 | 89 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 4 / 16585 | 241 |  |
| placenta | 8 / 280825 | 28 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 10 / 210574 | 47 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 2 / 96619 | 20 | |
| testis | 17 / 330442 | 51 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 12 / 232878 | 51 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_6591_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.37 ± 0.24 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.29 ± 0.17 | |
| Basal Part of Pons | 7.58 ± 0.24 | |
| Cerebellar Cortex | 7.75 ± 0.18 | |
| Cerebellar Nuclei | 6.89 ± 0.32 | |
| Claustrum | 7.11 ± 0.42 | |
| Epithalamus | 7.44 ± 0.19 | |
| Frontal Lobe | 7.44 ± 0.3 | |
| Globus Pallidus | 7.12 ± 0.14 | |
| Hypothalamus | 7.6 ± 0.2 | |
| Insula | 7.52 ± 0.21 | |
| Limbic Lobe | 7.41 ± 0.41 | |
| Mesencephalon | 7.27 ± 0.35 | |
| Myelencephalon | 7.39 ± 0.33 | |
| Occipital Lobe | 7.5 ± 0.3 | |
| Parietal Lobe | 7.58 ± 0.32 | |
| Pontine Tegmentum | 7.41 ± 0.33 | |
| Striatum | 7.02 ± 0.33 | |
| Subthalamus | 7.34 ± 0.19 | |
| Temporal Lobe | 7.53 ± 0.28 | |
| Thalamus | 7.49 ± 0.18 | |
| White Matter | 6.9 ± 0.08 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Reps1 | CB | Cerebellum | 27.72 | |
| 36.38 | | |||
| Reps1 | CTX | Cerebral cortex | 56.71 | |
| 43.82 | | |||
| Reps1 | HIP | Hippocampal region | 47.03 | |
| 81.45 | | |||
| Reps1 | HPF | Hippocampal formation | 48.2 | |
| 63.11 | | |||
| Reps1 | HY | Hypothalamus | 66.33 | |
| 59.04 | | |||
| Reps1 | LSX | Lateral septal complex | 23.02 | |
| 16.76 | | |||
| Reps1 | MB | Midbrain | 56.19 | |
| 52.9 | | |||
| Reps1 | MY | Medulla | 63.63 | |
| 75 | | |||
| Reps1 | OLF | Olfactory bulb | 57.12 | |
| 49.4 | | |||
| Reps1 | P | Pons | 57.96 | |
| 63.05 | | |||
| Reps1 | PAL | Pallidum | 58.26 | |
| 57.58 | | |||
| Reps1 | RHP | Retrohippocampal region | 49.71 | |
| 42.15 | | |||
| Reps1 | sAMY | Striatum-like amygdalar nuclei | 57.6 | |
| 45.41 | | |||
| Reps1 | STR | Striatum | 29.56 | |
| 22.99 | | |||
| Reps1 | STRd | Striatum dorsal region | 19.78 | |
| 14.55 | | |||
| Reps1 | STRv | Striatum ventral region | 52.08 | |
| 41.27 | | |||
| Reps1 | TH | Thalamus | 67.92 | |
| 61.05 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00390676 | 30 | 428 | 457 | SSSSQTLTQFDSNIAPADPDTAIVHPVPIR | Peptide Atlas |
| REPS1_HUMAN_411 | 10 | 411 | 420 | IHMQEMELKR | PRIDE |