AutismKB 2.0

Annotation Detail for NDST2


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Basic Information Top
Gene Symbol:NDST2 ( HSST2,MGC129697,MGC129705,NST2 )
Gene Full Name: N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2
Band: 10q22.2
Quick LinksEntrez ID:8509; OMIM: 603268; Uniprot ID:NDST2_HUMAN; ENSEMBL ID: ENSG00000166507; HGNC ID: 7681
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus19 / 56401233
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult85 / 193912143
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor1 / 3436629
chondrosarcoma3 / 8282336
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor8 / 26384530
glioma3 / 10688328
head and neck tumor2 / 13630214
kidney tumor2 / 6895929
leukemia12 / 95842125
liver tumor2 / 9635920
lung tumor3 / 10312729
lymphoma4 / 7175555
non-neoplasia3 / 9725030
normal99 / 336030729
ovarian tumor5 / 7668265
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood10 / 12347880
bone5 / 7165569
bone marrow1 / 4880120
brain20 / 110098918
cervix1 / 4817120
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye8 / 21105437
heart2 / 8962622
intestine6 / 23447225
kidney6 / 21177728
larynx0 / 241450 
liver4 / 20774319
lung15 / 33697444
lymph0 / 442700 
lymph node2 / 9161021
mammary gland4 / 15327126
mouth0 / 670520 
muscle1 / 1077159
nerve0 / 157680 
ovary7 / 10205168
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland1 / 1658560
placenta10 / 28082535
prostate4 / 18934521
salivary gland0 / 201550 
skin0 / 2105740 
spleen4 / 5395274
stomach1 / 9661910
testis13 / 33044239
thymus4 / 8113149
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203916_at
Cell line Expression level Expression bar
721_B_lymphoblasts25.65
Adipocyte13.55
AdrenalCortex15.45
Adrenalgland21.05
Amygdala22.1
Appendix17.9
AtrioventricularNode8.15
BDCA4+_DentriticCells69.3
Bonemarrow44.55
BronchialEpithelialCells10.9
CD105+_Endothelial14.5
CD14+_Monocytes24.15
CD19+_BCells(neg._sel.)17.4
CD33+_Myeloid20.9
CD34+26.55
CD4+_Tcells55.3
CD56+_NKCells19.8
CD71+_EarlyErythroid12.6
CD8+_Tcells102.65
CardiacMyocytes16.1
Caudatenucleus22.4
Cerebellum38.9
CerebellumPeduncles21.2
CiliaryGanglion6.35
CingulateCortex18.65
Colorectaladenocarcinoma13.1
DorsalRootGanglion9.05
FetalThyroid15.5
Fetalbrain20.3
Fetalliver14.4
Fetallung18.55
GlobusPallidus9.9
Heart24.8
Hypothalamus23.2
Kidney12.8
Leukemia_chronicMyelogenousK-56214.6
Leukemia_promyelocytic-HL-6015.95
Leukemialymphoblastic(MOLT-4)15.95
Liver18.5
Lung24.8
Lymphnode37.1
Lymphoma_burkitts(Daudi)23.75
Lymphoma_burkitts(Raji)25.15
MedullaOblongata17.55
OccipitalLobe14.95
OlfactoryBulb12.15
Ovary6.5
Pancreas11.65
PancreaticIslet17.05
ParietalLobe16.5
Pituitary18.65
Placenta16.4
Pons14.25
PrefrontalCortex18.65
Prostate28.6
Salivarygland12.7
SkeletalMuscle23.5
Skin12
SmoothMuscle20.35
Spinalcord17.4
SubthalamicNucleus12.05
SuperiorCervicalGanglion18.6
TemporalLobe13.05
Testis27.55
TestisGermCell9.35
TestisIntersitial7.8
TestisLeydigCell10.85
TestisSeminiferousTubule14.4
Thalamus17.25
Thymus34.95
Thyroid18.4
Tongue15.7
Tonsil15.95
Trachea25.35
TrigeminalGanglion15.9
Uterus12.3
UterusCorpus21.5
WholeBlood22.7
Wholebrain15.7
colon12.25
pineal_day15.34
pineal_night14.52
retina17.125
small_intestine15.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P85365
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.55 ± 0.5
Basal Forebrain5.24 ± 0.15
Basal Part of Pons5.5 ± 0.28
Cerebellar Cortex5.04 ± 0.34
Cerebellar Nuclei5.25 ± 0.32
Claustrum5.62 ± 0.82
Epithalamus4.97 ± 0.42
Frontal Lobe5.29 ± 0.44
Globus Pallidus5.58 ± 0.55
Hypothalamus5.16 ± 0.36
Insula5.22 ± 0.32
Limbic Lobe5.33 ± 0.39
Mesencephalon5.23 ± 0.5
Myelencephalon5.24 ± 0.44
Occipital Lobe4.96 ± 0.38
Parietal Lobe5.19 ± 0.36
Pontine Tegmentum5.11 ± 0.48
Striatum5.12 ± 0.31
Subthalamus5.05 ± 0.35
Temporal Lobe5.33 ± 0.41
Thalamus5.12 ± 0.43
White Matter5.3 ± 0.14
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ndst2CBCerebellum5.66
5.49
Ndst2CTXCerebral cortex14.61
9.68
Ndst2HIPHippocampal region7.91
6.34
Ndst2HPFHippocampal formation8.57
6.42
Ndst2HYHypothalamus4.35
2.74
Ndst2LSXLateral septal complex2.51
1.53
Ndst2MBMidbrain4.55
3.76
Ndst2MYMedulla15.42
14.94
Ndst2OLFOlfactory bulb15.22
10.22
Ndst2PPons10.39
9.47
Ndst2PALPallidum5.63
4.26
Ndst2RHPRetrohippocampal region9.68
6.55
Ndst2sAMYStriatum-like amygdalar nuclei5.82
3.61
Ndst2STRStriatum4.72
3.06
Ndst2STRdStriatum dorsal region5.07
3.43
Ndst2STRvStriatum ventral region3.69
2.15
Ndst2THThalamus7.53
5.21
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
NDST2_HUMAN_304 8 304 311 RLCLDLDR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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