Annotation Detail for COL27A1
Basic Information Top
| Gene Symbol: | COL27A1 ( FLJ11895,KIAA1870,MGC11337 ) |
|---|---|
| Gene Full Name: | collagen, type XXVII, alpha 1 |
| Band: | 9q32 |
| Quick Links | Entrez ID:85301; OMIM: 608461; Uniprot ID:CORA1_HUMAN; ENSEMBL ID: ENSG00000196739; HGNC ID: 22986 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.494892
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 38 / 564012 | 67 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 50 / 1939121 | 25 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 103 / 3360307 | 30 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 8 / 90257 | 88 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 11 / 1100989 | 9 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 7 / 149255 | 46 | |
| ear | 4 / 16212 | 246 |  |
| embryonic tissue | 11 / 215722 | 50 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 3 / 211054 | 14 | |
| heart | 4 / 89626 | 44 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 2 / 24145 | 82 | |
| liver | 6 / 207743 | 28 | |
| lung | 7 / 336974 | 20 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 6 / 210574 | 28 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 4 / 330442 | 12 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 13 / 232878 | 55 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_11125_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.82 ± 1.18 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.33 ± 0.36 | |
| Basal Part of Pons | 2.67 ± 1.23 | |
| Cerebellar Cortex | 3.54 ± 0.62 | |
| Cerebellar Nuclei | 2.66 ± 0.71 | |
| Claustrum | 3.47 ± 1.13 | |
| Epithalamus | 2.24 ± 0.72 | |
| Frontal Lobe | 2.21 ± 0.75 | |
| Globus Pallidus | 2.56 ± 0.84 | |
| Hypothalamus | 2.63 ± 0.63 | |
| Insula | 2.31 ± 0.7 | |
| Limbic Lobe | 2.42 ± 0.91 | |
| Mesencephalon | 2.82 ± 0.93 | |
| Myelencephalon | 2.54 ± 0.89 | |
| Occipital Lobe | 2.59 ± 0.91 | |
| Parietal Lobe | 2.59 ± 1.07 | |
| Pontine Tegmentum | 2.45 ± 0.71 | |
| Striatum | 2.21 ± 0.96 | |
| Subthalamus | 2.79 ± 1.05 | |
| Temporal Lobe | 2.45 ± 0.95 | |
| Thalamus | 2.48 ± 0.81 | |
| White Matter | 2.44 ± 0.46 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Col27a1 | CB | Cerebellum | 84.12 | |
| 100 | | |||
| Col27a1 | CTX | Cerebral cortex | 51.12 | |
| 42.04 | | |||
| Col27a1 | HIP | Hippocampal region | 37.31 | |
| 55.14 | | |||
| Col27a1 | HPF | Hippocampal formation | 32.2 | |
| 39.34 | | |||
| Col27a1 | HY | Hypothalamus | 25.87 | |
| 22.6 | | |||
| Col27a1 | LSX | Lateral septal complex | 42.14 | |
| 38 | | |||
| Col27a1 | MB | Midbrain | 15.8 | |
| 15.25 | | |||
| Col27a1 | MY | Medulla | 53.12 | |
| 64.18 | | |||
| Col27a1 | OLF | Olfactory bulb | 56.14 | |
| 56.84 | | |||
| Col27a1 | P | Pons | 33.59 | |
| 40.65 | | |||
| Col27a1 | PAL | Pallidum | 21.69 | |
| 19.55 | | |||
| Col27a1 | RHP | Retrohippocampal region | 26.86 | |
| 23.2 | | |||
| Col27a1 | sAMY | Striatum-like amygdalar nuclei | 32.76 | |
| 29.73 | | |||
| Col27a1 | STR | Striatum | 32.64 | |
| 27.05 | | |||
| Col27a1 | STRd | Striatum dorsal region | 29.06 | |
| 23.46 | | |||
| Col27a1 | STRv | Striatum ventral region | 38.08 | |
| 29.73 | | |||
| Col27a1 | TH | Thalamus | 36.94 | |
| 37.93 | |