AutismKB 2.0

Annotation Detail for CSDA


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Basic Information Top
Gene Symbol:CSDA ( CSDA1,DBPA,ZONAB )
Gene Full Name: cold shock domain protein A
Band: 12p13.1
Quick LinksEntrez ID:8531; OMIM: 603437; Uniprot ID:DBPA_HUMAN; ENSEMBL ID: ENSG00000060138; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body8 / 70761113
blastocyst16 / 62319256
fetus75 / 564012132
neonate4 / 31097128
infant1 / 2362042
juvenile4 / 5555671
adult388 / 1939121200
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor4 / 12794312
bladder carcinoma2 / 17475114
breast (mammary gland) tumor3 / 9417831
cervical tumor6 / 34366174
chondrosarcoma12 / 82823144
colorectal tumor10 / 11424687
esophageal tumor3 / 17290173
gastrointestinal tumor19 / 119369159
germ cell tumor8 / 26384530
glioma12 / 106883112
head and neck tumor16 / 136302117
kidney tumor8 / 68959116
leukemia63 / 95842657
liver tumor11 / 96359114
lung tumor24 / 103127232
lymphoma3 / 7175541
non-neoplasia5 / 9725051
normal488 / 3360307145
ovarian tumor26 / 76682339
pancreatic tumor16 / 104616152
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer18 / 102680175
retinoblastoma7 / 46356151
skin tumor22 / 124949176
soft tissue/muscle tissue tumor20 / 125191159
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland6 / 33197180
ascites0 / 400150 
bladder2 / 2975767
blood49 / 123478396
bone8 / 71655111
bone marrow5 / 48801102
brain44 / 110098939
cervix9 / 48171186
connective tissue27 / 149255180
ear4 / 16212246
embryonic tissue37 / 215722171
esophagus3 / 20209148
eye73 / 211054345
heart23 / 89626256
intestine26 / 234472110
kidney24 / 211777113
larynx4 / 24145165
liver28 / 207743134
lung56 / 336974166
lymph3 / 4427067
lymph node18 / 91610196
mammary gland15 / 15327197
mouth8 / 67052119
muscle84 / 107715779
nerve4 / 15768253
ovary27 / 102051264
pancreas35 / 214812162
parathyroid1 / 2053948
pharynx3 / 4132872
pituitary gland0 / 165850 
placenta25 / 28082589
prostate27 / 189345142
salivary gland3 / 20155148
skin43 / 210574204
spleen2 / 5395237
stomach20 / 96619206
testis66 / 330442199
thymus7 / 8113186
thyroid2 / 4747342
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord4 / 13680292
uterus14 / 23287860
vascular6 / 51780115
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201161_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts235.55
Adipocyte281.95
AdrenalCortex114.45
Adrenalgland58.05
Amygdala7.85
Appendix69.95
AtrioventricularNode49.35
BDCA4+_DentriticCells41.05
Bonemarrow268.7
BronchialEpithelialCells615.4
CD105+_Endothelial454.75
CD14+_Monocytes163.8
CD19+_BCells(neg._sel.)276.3
CD33+_Myeloid230.15
CD34+327.2
CD4+_Tcells26.15
CD56+_NKCells9.55
CD71+_EarlyErythroid1250.75
CD8+_Tcells23.85
CardiacMyocytes290.1
Caudatenucleus9.1
Cerebellum5.35
CerebellumPeduncles9.15
CiliaryGanglion44.4
CingulateCortex8.7
Colorectaladenocarcinoma341.65
DorsalRootGanglion14.05
FetalThyroid243.3
Fetalbrain10.95
Fetalliver49.6
Fetallung221.15
GlobusPallidus5
Heart403.15
Hypothalamus10.05
Kidney9.7
Leukemia_chronicMyelogenousK-562103.3
Leukemia_promyelocytic-HL-60247.4
Leukemialymphoblastic(MOLT-4)121.7
Liver14.7
Lung381.15
Lymphnode26.75
Lymphoma_burkitts(Daudi)77.85
Lymphoma_burkitts(Raji)994.65
MedullaOblongata8.25
OccipitalLobe5.95
OlfactoryBulb44.7
Ovary219.45
Pancreas170.7
PancreaticIslet183.25
ParietalLobe12.15
Pituitary20
Placenta137.75
Pons24
PrefrontalCortex9.9
Prostate265.7
Salivarygland115.55
SkeletalMuscle4218.5
Skin156.6
SmoothMuscle326.65
Spinalcord17.55
SubthalamicNucleus7.75
SuperiorCervicalGanglion22.7
TemporalLobe23.3
Testis952.7
TestisGermCell1299.35
TestisIntersitial1619.25
TestisLeydigCell948.65
TestisSeminiferousTubule1031.25
Thalamus9.15
Thymus65.7
Thyroid249.9
Tongue833.25
Tonsil86.75
Trachea110.85
TrigeminalGanglion64.35
Uterus157.85
UterusCorpus140.4
WholeBlood41.75
Wholebrain8.25
colon106
pineal_day15.56
pineal_night10.92
retina84.825
small_intestine83.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P625382
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.56 ± 0.41
Basal Forebrain4.48 ± 0.45
Basal Part of Pons4.25 ± 0.31
Cerebellar Cortex4.14 ± 0.32
Cerebellar Nuclei5.26 ± 0.38
Claustrum4.72 ± 0.62
Epithalamus6 ± 0.42
Frontal Lobe4.53 ± 0.54
Globus Pallidus6.05 ± 0.37
Hypothalamus4.36 ± 0.78
Insula4.43 ± 0.42
Limbic Lobe4.5 ± 0.58
Mesencephalon4.79 ± 0.47
Myelencephalon4.71 ± 0.5
Occipital Lobe4.71 ± 0.53
Parietal Lobe4.59 ± 0.54
Pontine Tegmentum4.67 ± 0.68
Striatum5.18 ± 0.59
Subthalamus4.5 ± 0.52
Temporal Lobe4.44 ± 0.55
Thalamus4.75 ± 0.46
White Matter5.51 ± 0.67
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
CsdaCBCerebellum24.61
30.64
CsdaCTXCerebral cortex66.58
46.97
CsdaHIPHippocampal region31.42
40.9
CsdaHPFHippocampal formation43.12
42.88
CsdaHYHypothalamus10.11
7.24
CsdaLSXLateral septal complex7.15
5.06
CsdaMBMidbrain14.53
11.89
CsdaMYMedulla18.54
16.13
CsdaOLFOlfactory bulb39.04
28.12
CsdaPPons17.25
15.48
CsdaPALPallidum12.77
9.76
CsdaRHPRetrohippocampal region59.64
45.61
CsdasAMYStriatum-like amygdalar nuclei8.12
6.68
CsdaSTRStriatum20.16
13.96
CsdaSTRdStriatum dorsal region24.22
17.1
CsdaSTRvStriatum ventral region17.64
10.78
CsdaTHThalamus27.5
22.66
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
DBPA_HUMAN_102 8 102 109 NGYGFINR PRIDE
DBPA_HUMAN_148 22 148 169 GEKGAEAANVTGPDGVPVEGSR PRIDE
DBPA_HUMAN_270 14 270 283 GVPEGAQLQGPVHR PRIDE
DBPA_HUMAN_301 26 301 326 PAPAVGEAEDKENQQATSGPNQPSVR PRIDE
DBPA_HUMAN_353 19 353 371 AGEAPTENPAPPTQQSSAE PRIDE
DBPA_HUMAN_362 11 362 372 PAPPTQQSSAE PRIDE
PAp00005741 16 110 125 NDTKEDVFVHQTAIKK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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