AutismKB 2.0

Annotation Detail for CHST1


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Basic Information Top
Gene Symbol:CHST1 ( C6ST,KS6ST,KSGal6ST )
Gene Full Name: carbohydrate (keratan sulfate Gal-6) sulfotransferase 1
Band: 11p11.2
Quick LinksEntrez ID:8534; OMIM: 603797; Uniprot ID:CHST1_HUMAN; ENSEMBL ID: ENSG00000175264; HGNC ID: 1969
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus11 / 56401219
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult23 / 193912111
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor3 / 26384511
glioma5 / 10688346
head and neck tumor6 / 13630244
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal34 / 336030710
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain39 / 110098935
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye8 / 21105437
heart2 / 8962622
intestine1 / 2344724
kidney2 / 2117779
larynx0 / 241450 
liver0 / 2077430 
lung8 / 33697423
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth5 / 6705274
muscle1 / 1077159
nerve1 / 1576863
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland1 / 2015549
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205567_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.35
Adipocyte5.6
AdrenalCortex6.1
Adrenalgland4.95
Amygdala400.25
Appendix7.25
AtrioventricularNode4.45
BDCA4+_DentriticCells5.75
Bonemarrow5.75
BronchialEpithelialCells5.2
CD105+_Endothelial5.95
CD14+_Monocytes6.05
CD19+_BCells(neg._sel.)5.75
CD33+_Myeloid7.3
CD34+7.15
CD4+_Tcells5.75
CD56+_NKCells6.55
CD71+_EarlyErythroid5.5
CD8+_Tcells5.4
CardiacMyocytes7.05
Caudatenucleus39.2
Cerebellum4.75
CerebellumPeduncles6.75
CiliaryGanglion4.2
CingulateCortex41.7
Colorectaladenocarcinoma5.9
DorsalRootGanglion4.45
FetalThyroid10.55
Fetalbrain28.3
Fetalliver4.8
Fetallung4.65
GlobusPallidus8.95
Heart7.4
Hypothalamus21.6
Kidney4.7
Leukemia_chronicMyelogenousK-5625.3
Leukemia_promyelocytic-HL-605.15
Leukemialymphoblastic(MOLT-4)4.7
Liver7.55
Lung7.05
Lymphnode5.05
Lymphoma_burkitts(Daudi)7.25
Lymphoma_burkitts(Raji)7.95
MedullaOblongata17.75
OccipitalLobe65.2
OlfactoryBulb4.6
Ovary3.9
Pancreas4.55
PancreaticIslet6.15
ParietalLobe22.7
Pituitary6.9
Placenta5.4
Pons11.75
PrefrontalCortex222.2
Prostate6.6
Salivarygland4.7
SkeletalMuscle6.7
Skin4.5
SmoothMuscle6.1
Spinalcord8.95
SubthalamicNucleus20.8
SuperiorCervicalGanglion6.6
TemporalLobe17.75
Testis6
TestisGermCell5.35
TestisIntersitial5.9
TestisLeydigCell5.9
TestisSeminiferousTubule5.6
Thalamus69.65
Thymus4.65
Thyroid93.95
Tongue5.65
Tonsil5.35
Trachea6.55
TrigeminalGanglion5.9
Uterus4.55
UterusCorpus5.5
WholeBlood6
Wholebrain170.35
colon5.6
pineal_day93.24
pineal_night306.98
retina7.7
small_intestine5.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_15542_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.22 ± 0.82
Basal Forebrain4.94 ± 0.6
Basal Part of Pons5.49 ± 0.44
Cerebellar Cortex4.84 ± 0.67
Cerebellar Nuclei5.04 ± 0.39
Claustrum7.08 ± 0.85
Epithalamus4.63 ± 0.69
Frontal Lobe5.53 ± 0.76
Globus Pallidus5.58 ± 0.84
Hypothalamus5.04 ± 0.8
Insula6.04 ± 0.65
Limbic Lobe6.24 ± 0.87
Mesencephalon5.58 ± 0.88
Myelencephalon5.6 ± 0.7
Occipital Lobe5.51 ± 0.61
Parietal Lobe5.76 ± 0.88
Pontine Tegmentum5.46 ± 0.78
Striatum5.75 ± 0.67
Subthalamus5.15 ± 0.71
Temporal Lobe5.81 ± 0.64
Thalamus5.62 ± 0.57
White Matter3.99 ± 0.95
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Chst1CBCerebellum32.1
44.3
Chst1CTXCerebral cortex100
100
Chst1HIPHippocampal region100
100
Chst1HPFHippocampal formation100
100
Chst1HYHypothalamus100
100
Chst1LSXLateral septal complex100
100
Chst1MBMidbrain99.81
100
Chst1MYMedulla78.53
94.2
Chst1OLFOlfactory bulb100
100
Chst1PPons88.4
96.68
Chst1PALPallidum91.47
99.53
Chst1RHPRetrohippocampal region100
100
Chst1sAMYStriatum-like amygdalar nuclei100
100
Chst1STRStriatum100
100
Chst1STRdStriatum dorsal region100
100
Chst1STRvStriatum ventral region100
100
Chst1THThalamus100
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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