Annotation Detail for FAM40A
Basic Information Top
| Gene Symbol: | FAM40A ( FLJ14743,KIAA1761,MGC148091,RP4-773N10.1 ) |
|---|---|
| Gene Full Name: | family with sequence similarity 40, member A |
| Band: | 1p13.3 |
| Quick Links | Entrez ID:85369; OMIM: NA; Uniprot ID:FA40A_HUMAN; ENSEMBL ID: ENSG00000143093; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.584996
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 4 / 62319 | 64 |  |
| fetus | 58 / 564012 | 102 | |
| neonate | 2 / 31097 | 64 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 94 / 1939121 | 48 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 6 / 94178 | 63 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 29 / 263845 | 109 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 8 / 95842 | 83 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 189 / 3360307 | 56 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 6 / 124949 | 48 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 6 / 123478 | 48 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 87 / 1100989 | 79 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 8 / 149255 | 53 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 11 / 215722 | 50 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 4 / 89626 | 44 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 0 / 24145 | 0 | |
| liver | 6 / 207743 | 28 | |
| lung | 12 / 336974 | 35 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 6 / 91610 | 65 | |
| mammary gland | 11 / 153271 | 71 | |
| mouth | 7 / 67052 | 104 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 15 / 280825 | 53 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 7 / 210574 | 33 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 4 / 96619 | 41 | |
| testis | 47 / 330442 | 142 | |
| thymus | 7 / 81131 | 86 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_182_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.94 ± 0.5 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.26 ± 0.58 | |
| Basal Part of Pons | 3.7 ± 0.59 | |
| Cerebellar Cortex | 3.89 ± 0.34 | |
| Cerebellar Nuclei | 3.34 ± 0.48 | |
| Claustrum | 4.01 ± 0.55 | |
| Epithalamus | 3.56 ± 0.46 | |
| Frontal Lobe | 3.72 ± 0.49 | |
| Globus Pallidus | 3.65 ± 0.37 | |
| Hypothalamus | 3.74 ± 0.43 | |
| Insula | 3.9 ± 0.7 | |
| Limbic Lobe | 3.6 ± 0.52 | |
| Mesencephalon | 3.7 ± 0.68 | |
| Myelencephalon | 3.6 ± 0.55 | |
| Occipital Lobe | 3.37 ± 0.53 | |
| Parietal Lobe | 3.62 ± 0.54 | |
| Pontine Tegmentum | 3.5 ± 0.62 | |
| Striatum | 2.5 ± 0.82 | |
| Subthalamus | 3.25 ± 0.73 | |
| Temporal Lobe | 3.76 ± 0.41 | |
| Thalamus | 3.7 ± 0.59 | |
| White Matter | 3.6 ± 0.52 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 6330569M22Rik | CB | Cerebellum | 27.01 | |
| 42.41 | | |||
| 6330569M22Rik | CTX | Cerebral cortex | 100 | |
| 96.22 | | |||
| 6330569M22Rik | HIP | Hippocampal region | 70.24 | |
| 100 | | |||
| 6330569M22Rik | HPF | Hippocampal formation | 78.21 | |
| 100 | | |||
| 6330569M22Rik | HY | Hypothalamus | 87.09 | |
| 73.83 | | |||
| 6330569M22Rik | LSX | Lateral septal complex | 76 | |
| 58.5 | | |||
| 6330569M22Rik | MB | Midbrain | 61.72 | |
| 56.59 | | |||
| 6330569M22Rik | MY | Medulla | 60.76 | |
| 70.45 | | |||
| 6330569M22Rik | OLF | Olfactory bulb | 85.36 | |
| 75.12 | | |||
| 6330569M22Rik | P | Pons | 64.37 | |
| 69.18 | | |||
| 6330569M22Rik | PAL | Pallidum | 78.2 | |
| 76.04 | | |||
| 6330569M22Rik | RHP | Retrohippocampal region | 95.65 | |
| 84.86 | | |||
| 6330569M22Rik | sAMY | Striatum-like amygdalar nuclei | 73.34 | |
| 58.79 | | |||
| 6330569M22Rik | STR | Striatum | 32.54 | |
| 25.94 | | |||
| 6330569M22Rik | STRd | Striatum dorsal region | 21.17 | |
| 17.79 | | |||
| 6330569M22Rik | STRv | Striatum ventral region | 31.5 | |
| 22.48 | | |||
| 6330569M22Rik | TH | Thalamus | 74.69 | |
| 64.26 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00078605 | 24 | 539 | 562 | TDSINILADVLPEEMPTTVLQSMK | Peptide Atlas |