AutismKB 2.0

Annotation Detail for MICALL1


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Basic Information Top
Gene Symbol:MICALL1 ( DKFZp686M2226,FLJ45921,KIAA1668,MICAL-L1,MIRAB13 )
Gene Full Name: MICAL-like 1
Band: 22q13.1
Quick LinksEntrez ID:85377; OMIM: NA; Uniprot ID:MILK1_HUMAN; ENSEMBL ID: ENSG00000100139; HGNC ID: 29804
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst1 / 6231916
fetus9 / 56401215
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult91 / 193912146
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma3 / 17475171
breast (mammary gland) tumor3 / 9417831
cervical tumor6 / 34366174
chondrosarcoma3 / 8282336
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor20 / 26384575
glioma5 / 10688346
head and neck tumor4 / 13630229
kidney tumor7 / 68959101
leukemia3 / 9584231
liver tumor2 / 9635920
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia3 / 9725030
normal94 / 336030727
ovarian tumor3 / 7668239
pancreatic tumor8 / 10461676
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer4 / 10268038
retinoblastoma1 / 4635621
skin tumor4 / 12494932
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder3 / 29757100
blood3 / 12347824
bone3 / 7165541
bone marrow0 / 488010 
brain20 / 110098918
cervix7 / 48171145
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue11 / 21572250
esophagus0 / 202090 
eye6 / 21105428
heart1 / 8962611
intestine6 / 23447225
kidney9 / 21177742
larynx3 / 24145124
liver2 / 2077439
lung15 / 33697444
lymph0 / 442700 
lymph node2 / 9161021
mammary gland5 / 15327132
mouth2 / 6705229
muscle0 / 1077150 
nerve1 / 1576863
ovary4 / 10205139
pancreas9 / 21481241
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta35 / 280825124
prostate9 / 18934547
salivary gland0 / 201550 
skin12 / 21057456
spleen0 / 539520 
stomach3 / 9661931
testis10 / 33044230
thymus0 / 811310 
thyroid2 / 4747342
tonsil3 / 16999176
trachea0 / 524130 
umbilical cord0 / 136800 
uterus9 / 23287838
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221779_at
Cell line Expression level Expression bar
721_B_lymphoblasts9
Adipocyte4.85
AdrenalCortex3.4
Adrenalgland2.9
Amygdala3.55
Appendix3.3
AtrioventricularNode2.65
BDCA4+_DentriticCells4.3
Bonemarrow3.35
BronchialEpithelialCells53.35
CD105+_Endothelial3.45
CD14+_Monocytes3.6
CD19+_BCells(neg._sel.)3.8
CD33+_Myeloid4.35
CD34+4.35
CD4+_Tcells3.75
CD56+_NKCells4.9
CD71+_EarlyErythroid3.1
CD8+_Tcells3.3
CardiacMyocytes4.2
Caudatenucleus3
Cerebellum2.7
CerebellumPeduncles3.75
CiliaryGanglion2.85
CingulateCortex3.5
Colorectaladenocarcinoma3.85
DorsalRootGanglion2.55
FetalThyroid3.25
Fetalbrain3.4
Fetalliver2.9
Fetallung2.85
GlobusPallidus2.45
Heart4.2
Hypothalamus3.7
Kidney3.05
Leukemia_chronicMyelogenousK-5623.05
Leukemia_promyelocytic-HL-602.9
Leukemialymphoblastic(MOLT-4)2.7
Liver4.35
Lung4.25
Lymphnode2.9
Lymphoma_burkitts(Daudi)4.3
Lymphoma_burkitts(Raji)4.6
MedullaOblongata3.1
OccipitalLobe3
OlfactoryBulb2.65
Ovary2.2
Pancreas2.65
PancreaticIslet3.55
ParietalLobe4.45
Pituitary3.95
Placenta53.35
Pons3.15
PrefrontalCortex4.25
Prostate4.4
Salivarygland3.95
SkeletalMuscle3.8
Skin2.85
SmoothMuscle3.9
Spinalcord4.25
SubthalamicNucleus3
SuperiorCervicalGanglion5.6
TemporalLobe3.05
Testis6.65
TestisGermCell3.4
TestisIntersitial2.8
TestisLeydigCell3.85
TestisSeminiferousTubule2.9
Thalamus3.4
Thymus2.95
Thyroid4.2
Tongue3.3
Tonsil3.25
Trachea2.85
TrigeminalGanglion3.2
Uterus5.1
UterusCorpus3.05
WholeBlood3.7
Wholebrain2.9
colon3.4
pineal_day4.62
pineal_night4.1
retina4.125
small_intestine3.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1449_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.49 ± 0.67
Basal Forebrain5.85 ± 0.3
Basal Part of Pons5.98 ± 0.52
Cerebellar Cortex5.29 ± 0.33
Cerebellar Nuclei6.52 ± 0.61
Claustrum5.7 ± 0.84
Epithalamus5.07 ± 0.48
Frontal Lobe5.45 ± 0.69
Globus Pallidus7.53 ± 0.32
Hypothalamus5.03 ± 0.44
Insula5.02 ± 0.62
Limbic Lobe5.78 ± 0.69
Mesencephalon5.71 ± 0.74
Myelencephalon5.71 ± 0.69
Occipital Lobe5.96 ± 0.71
Parietal Lobe5.65 ± 0.61
Pontine Tegmentum5.65 ± 0.71
Striatum5.99 ± 0.81
Subthalamus5.81 ± 0.36
Temporal Lobe5.35 ± 0.6
Thalamus5.74 ± 0.6
White Matter7.87 ± 0.79
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
MILK1_HUMAN_570 14 570 583 VEQMPQASPGLAPR PRIDE
MILK1_HUMAN_571 14 571 584 VEQMPQASPGLAPR PRIDE
MILK1_HUMAN_782 13 782 794 VLMQELVTLIEQR PRIDE
PAp00068907 18 653 670 GSKPVRPPAPGHGFPLIK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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