AutismKB 2.0

Annotation Detail for LMO4


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Basic Information Top
Gene Symbol:LMO4 ( - )
Gene Full Name: LIM domain only 4
Band: 1p22.3
Quick LinksEntrez ID:8543; OMIM: 603129; Uniprot ID:LMO4_HUMAN; ENSEMBL ID: ENSG00000143013; HGNC ID: 6644
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst1 / 6231916
fetus78 / 564012138
neonate0 / 310970 
infant2 / 2362084
juvenile1 / 5555617
adult104 / 193912153
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma4 / 17475228
breast (mammary gland) tumor2 / 9417821
cervical tumor1 / 3436629
chondrosarcoma8 / 8282396
colorectal tumor4 / 11424635
esophageal tumor0 / 172900 
gastrointestinal tumor5 / 11936941
germ cell tumor13 / 26384549
glioma8 / 10688374
head and neck tumor10 / 13630273
kidney tumor6 / 6895987
leukemia0 / 958420 
liver tumor3 / 9635931
lung tumor5 / 10312748
lymphoma5 / 7175569
non-neoplasia8 / 9725082
normal219 / 336030765
ovarian tumor2 / 7668226
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma8 / 46356172
skin tumor2 / 12494916
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland0 / 331970 
ascites0 / 400150 
bladder4 / 29757134
blood0 / 1234780 
bone8 / 71655111
bone marrow0 / 488010 
brain140 / 1100989127
cervix1 / 4817120
connective tissue8 / 14925553
ear6 / 16212370
embryonic tissue8 / 21572237
esophagus0 / 202090 
eye22 / 211054104
heart1 / 8962611
intestine10 / 23447242
kidney8 / 21177737
larynx8 / 24145331
liver4 / 20774319
lung27 / 33697480
lymph4 / 4427090
lymph node3 / 9161032
mammary gland3 / 15327119
mouth1 / 6705214
muscle2 / 10771518
nerve1 / 1576863
ovary7 / 10205168
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta23 / 28082581
prostate5 / 18934526
salivary gland0 / 201550 
skin6 / 21057428
spleen2 / 5395237
stomach6 / 9661962
testis6 / 33044218
thymus0 / 811310 
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus12 / 23287851
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209204_at
Cell line Expression level Expression bar
721_B_lymphoblasts17.45
Adipocyte20.1
AdrenalCortex22.4
Adrenalgland18.65
Amygdala85
Appendix22.15
AtrioventricularNode22.8
BDCA4+_DentriticCells21.85
Bonemarrow22.55
BronchialEpithelialCells13.5
CD105+_Endothelial20.4
CD14+_Monocytes20.65
CD19+_BCells(neg._sel.)18.2
CD33+_Myeloid26.25
CD34+26.5
CD4+_Tcells22.55
CD56+_NKCells23.35
CD71+_EarlyErythroid19.05
CD8+_Tcells17
CardiacMyocytes30.35
Caudatenucleus18.1
Cerebellum16.85
CerebellumPeduncles25.15
CiliaryGanglion26.35
CingulateCortex98.25
Colorectaladenocarcinoma20.75
DorsalRootGanglion23.45
FetalThyroid22.15
Fetalbrain29.75
Fetalliver15.7
Fetallung16.15
GlobusPallidus21.6
Heart48.75
Hypothalamus21.7
Kidney16.65
Leukemia_chronicMyelogenousK-56217.2
Leukemia_promyelocytic-HL-6016.8
Leukemialymphoblastic(MOLT-4)14.5
Liver36.1
Lung22.7
Lymphnode15.2
Lymphoma_burkitts(Daudi)27.35
Lymphoma_burkitts(Raji)44.55
MedullaOblongata27.65
OccipitalLobe39.2
OlfactoryBulb17.15
Ovary14
Pancreas16.45
PancreaticIslet19.7
ParietalLobe41
Pituitary23.75
Placenta18.65
Pons56.4
PrefrontalCortex125.25
Prostate24.4
Salivarygland16.4
SkeletalMuscle24.1
Skin16.95
SmoothMuscle21.55
Spinalcord22
SubthalamicNucleus42.75
SuperiorCervicalGanglion30.85
TemporalLobe57.55
Testis17.45
TestisGermCell14.55
TestisIntersitial17.35
TestisLeydigCell23
TestisSeminiferousTubule17.5
Thalamus21.15
Thymus16.4
Thyroid25.35
Tongue20.7
Tonsil24.3
Trachea18.15
TrigeminalGanglion30.15
Uterus17
UterusCorpus18.55
WholeBlood19.95
Wholebrain248.15
colon12.05
pineal_day25.58
pineal_night23.5
retina24.4
small_intestine16.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_14273_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.95 ± 0.86
Basal Forebrain8.52 ± 0.36
Basal Part of Pons9.7 ± 0.32
Cerebellar Cortex8.32 ± 0.38
Cerebellar Nuclei8.64 ± 0.72
Claustrum9.49 ± 0.79
Epithalamus8.24 ± 0.53
Frontal Lobe9.5 ± 0.61
Globus Pallidus7.21 ± 1.05
Hypothalamus8.33 ± 0.59
Insula9.49 ± 0.34
Limbic Lobe9.4 ± 1.12
Mesencephalon8.43 ± 0.66
Myelencephalon8.86 ± 0.9
Occipital Lobe8.07 ± 0.95
Parietal Lobe9.08 ± 0.82
Pontine Tegmentum8.58 ± 0.57
Striatum7.56 ± 1.42
Subthalamus7.77 ± 0.45
Temporal Lobe9.33 ± 0.59
Thalamus8.17 ± 0.54
White Matter7.11 ± 0.86
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Lmo4CBCerebellum100
100
Lmo4CTXCerebral cortex100
100
Lmo4HIPHippocampal region100
100
Lmo4HPFHippocampal formation100
100
Lmo4HYHypothalamus100
100
Lmo4LSXLateral septal complex100
100
Lmo4MBMidbrain100
100
Lmo4MYMedulla100
100
Lmo4OLFOlfactory bulb100
100
Lmo4PPons100
100
Lmo4PALPallidum100
100
Lmo4RHPRetrohippocampal region100
100
Lmo4sAMYStriatum-like amygdalar nuclei100
100
Lmo4STRStriatum100
100
Lmo4STRdStriatum dorsal region100
100
Lmo4STRvStriatum ventral region100
100
Lmo4THThalamus100
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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