Annotation Detail for LRRCC1
Basic Information Top
| Gene Symbol: | LRRCC1 ( CLERC,KIAA1764,SAP2 ) |
|---|---|
| Gene Full Name: | leucine rich repeat and coiled-coil domain containing 1 |
| Band: | 8q21.2 |
| Quick Links | Entrez ID:85444; OMIM: NA; Uniprot ID:LRCC1_HUMAN; ENSEMBL ID: ENSG00000133739; HGNC ID: 29373 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.193115
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 5 / 564012 | 8 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 22 / 1939121 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 50 / 3360307 | 14 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 26 / 1100989 | 23 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 9 / 215722 | 41 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 0 / 89626 | 0 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 1 / 96619 | 10 | |
| testis | 25 / 330442 | 75 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_23_P157527
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.51 ± 0.64 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.48 ± 0.53 | |
| Basal Part of Pons | 4.62 ± 0.36 | |
| Cerebellar Cortex | 3.91 ± 0.37 | |
| Cerebellar Nuclei | 4.82 ± 0.63 | |
| Claustrum | 4 ± 0.85 | |
| Epithalamus | 5.36 ± 0.49 | |
| Frontal Lobe | 4.48 ± 0.6 | |
| Globus Pallidus | 6 ± 0.34 | |
| Hypothalamus | 4.56 ± 0.54 | |
| Insula | 4.57 ± 0.19 | |
| Limbic Lobe | 4.23 ± 0.62 | |
| Mesencephalon | 4.51 ± 0.62 | |
| Myelencephalon | 4.45 ± 0.6 | |
| Occipital Lobe | 4.45 ± 0.47 | |
| Parietal Lobe | 4.49 ± 0.41 | |
| Pontine Tegmentum | 4.51 ± 0.68 | |
| Striatum | 4.99 ± 0.49 | |
| Subthalamus | 4.65 ± 0.56 | |
| Temporal Lobe | 4.38 ± 0.56 | |
| Thalamus | 4.5 ± 0.52 | |
| White Matter | 5.87 ± 0.6 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Lrrcc1 | CB | Cerebellum | 8.61 | |
| 9.1 | | |||
| Lrrcc1 | CTX | Cerebral cortex | 7.67 | |
| 5.48 | | |||
| Lrrcc1 | HIP | Hippocampal region | 5.72 | |
| 5.18 | | |||
| Lrrcc1 | HPF | Hippocampal formation | 4.95 | |
| 3.98 | | |||
| Lrrcc1 | HY | Hypothalamus | 3.29 | |
| 2.48 | | |||
| Lrrcc1 | LSX | Lateral septal complex | 2.62 | |
| 1.7 | | |||
| Lrrcc1 | MB | Midbrain | 7.03 | |
| 6.22 | | |||
| Lrrcc1 | MY | Medulla | 11.24 | |
| 11.12 | | |||
| Lrrcc1 | OLF | Olfactory bulb | 6.17 | |
| 3.89 | | |||
| Lrrcc1 | P | Pons | 6.83 | |
| 6.8 | | |||
| Lrrcc1 | PAL | Pallidum | 6.15 | |
| 5.68 | | |||
| Lrrcc1 | RHP | Retrohippocampal region | 3.67 | |
| 2.35 | | |||
| Lrrcc1 | sAMY | Striatum-like amygdalar nuclei | 8.85 | |
| 5.91 | | |||
| Lrrcc1 | STR | Striatum | 2.78 | |
| 1.99 | | |||
| Lrrcc1 | STRd | Striatum dorsal region | 2.47 | |
| 1.91 | | |||
| Lrrcc1 | STRv | Striatum ventral region | 1.58 | |
| 0.98 | | |||
| Lrrcc1 | TH | Thalamus | 3.67 | |
| 2.96 | |