AutismKB 2.0

Annotation Detail for CGGBP1


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Basic Information Top
Gene Symbol:CGGBP1 ( CGGBP,p20-CGGBP )
Gene Full Name: CGG triplet repeat binding protein 1
Band: 3p11.1
Quick LinksEntrez ID:8545; OMIM: 603363; Uniprot ID:CGBP1_HUMAN; ENSEMBL ID: ENSG00000163320; HGNC ID: 1888
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body11 / 70761155
blastocyst4 / 6231964
fetus70 / 564012124
neonate3 / 3109796
infant0 / 236200 
juvenile3 / 5555653
adult153 / 193912178
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor5 / 9417853
cervical tumor0 / 343660 
chondrosarcoma9 / 82823108
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor12 / 119369100
germ cell tumor32 / 263845121
glioma6 / 10688356
head and neck tumor5 / 13630236
kidney tumor8 / 68959116
leukemia3 / 9584231
liver tumor9 / 9635993
lung tumor3 / 10312729
lymphoma4 / 7175555
non-neoplasia5 / 9725051
normal357 / 3360307106
ovarian tumor7 / 7668291
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer5 / 10268048
retinoblastoma3 / 4635664
skin tumor10 / 12494980
soft tissue/muscle tissue tumor12 / 12519195
uterine tumor11 / 90257121
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland1 / 3319730
ascites1 / 4001524
bladder3 / 29757100
blood4 / 12347832
bone9 / 71655125
bone marrow5 / 48801102
brain90 / 110098981
cervix0 / 481710 
connective tissue8 / 14925553
ear4 / 16212246
embryonic tissue26 / 215722120
esophagus0 / 202090 
eye21 / 21105499
heart6 / 8962666
intestine8 / 23447234
kidney47 / 211777221
larynx1 / 2414541
liver18 / 20774386
lung26 / 33697477
lymph3 / 4427067
lymph node36 / 91610392
mammary gland6 / 15327139
mouth2 / 6705229
muscle13 / 107715120
nerve2 / 15768126
ovary7 / 10205168
pancreas10 / 21481246
parathyroid7 / 20539340
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta25 / 28082589
prostate13 / 18934568
salivary gland3 / 20155148
skin21 / 21057499
spleen0 / 539520 
stomach11 / 96619113
testis45 / 330442136
thymus10 / 81131123
thyroid2 / 4747342
tonsil1 / 1699958
trachea8 / 52413152
umbilical cord2 / 13680146
uterus28 / 232878120
vascular11 / 51780212
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 206861_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts28.3
Adipocyte41.15
AdrenalCortex31.85
Adrenalgland30.05
Amygdala26.1
Appendix35.75
AtrioventricularNode24.45
BDCA4+_DentriticCells70.05
Bonemarrow33.3
BronchialEpithelialCells25.05
CD105+_Endothelial24.9
CD14+_Monocytes25.85
CD19+_BCells(neg._sel.)75.05
CD33+_Myeloid51.1
CD34+46.6
CD4+_Tcells72.65
CD56+_NKCells111.8
CD71+_EarlyErythroid30.65
CD8+_Tcells36.5
CardiacMyocytes40.95
Caudatenucleus30.65
Cerebellum34.8
CerebellumPeduncles37.05
CiliaryGanglion22.45
CingulateCortex24.75
Colorectaladenocarcinoma29.35
DorsalRootGanglion24.65
FetalThyroid28.95
Fetalbrain37.05
Fetalliver33.15
Fetallung27.9
GlobusPallidus25.05
Heart58.75
Hypothalamus25.5
Kidney41.15
Leukemia_chronicMyelogenousK-56229.85
Leukemia_promyelocytic-HL-6026.75
Leukemialymphoblastic(MOLT-4)26.8
Liver37.95
Lung36.75
Lymphnode26.25
Lymphoma_burkitts(Daudi)40.7
Lymphoma_burkitts(Raji)41.55
MedullaOblongata32.6
OccipitalLobe29.6
OlfactoryBulb26.1
Ovary21.55
Pancreas23.25
PancreaticIslet34.45
ParietalLobe34.2
Pituitary44.2
Placenta61.9
Pons37.45
PrefrontalCortex28.65
Prostate32
Salivarygland29.35
SkeletalMuscle49.85
Skin25.7
SmoothMuscle34.7
Spinalcord17.05
SubthalamicNucleus26.75
SuperiorCervicalGanglion37.5
TemporalLobe29.85
Testis66
TestisGermCell30.4
TestisIntersitial40.35
TestisLeydigCell42.6
TestisSeminiferousTubule42.9
Thalamus27.6
Thymus39.95
Thyroid33.3
Tongue38.05
Tonsil39.25
Trachea33.25
TrigeminalGanglion31.7
Uterus24.9
UterusCorpus33.75
WholeBlood63.35
Wholebrain27.1
colon33.3
pineal_day27.3
pineal_night27.26
retina34.9
small_intestine32.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P155276
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.71 ± 0.28
Basal Forebrain9.78 ± 0.25
Basal Part of Pons9.78 ± 0.18
Cerebellar Cortex10.09 ± 0.13
Cerebellar Nuclei9.85 ± 0.2
Claustrum9.88 ± 0.25
Epithalamus10.05 ± 0.21
Frontal Lobe9.9 ± 0.24
Globus Pallidus9.43 ± 0.14
Hypothalamus10 ± 0.36
Insula9.97 ± 0.15
Limbic Lobe9.76 ± 0.32
Mesencephalon9.85 ± 0.33
Myelencephalon9.83 ± 0.29
Occipital Lobe9.71 ± 0.28
Parietal Lobe9.88 ± 0.26
Pontine Tegmentum9.87 ± 0.29
Striatum9.55 ± 0.22
Subthalamus10 ± 0.19
Temporal Lobe9.96 ± 0.25
Thalamus9.8 ± 0.25
White Matter10.38 ± 0.05
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cggbp1CBCerebellum20.91
20.42
Cggbp1CTXCerebral cortex57.85
40.47
Cggbp1HIPHippocampal region37.06
43.19
Cggbp1HPFHippocampal formation37.7
37.49
Cggbp1HYHypothalamus7.49
5.14
Cggbp1LSXLateral septal complex18.3
12.55
Cggbp1MBMidbrain8.54
6.77
Cggbp1MYMedulla8.95
8.17
Cggbp1OLFOlfactory bulb44.64
34.84
Cggbp1PPons9.85
8.28
Cggbp1PALPallidum10.35
7.62
Cggbp1RHPRetrohippocampal region38.78
29.37
Cggbp1sAMYStriatum-like amygdalar nuclei19.94
12.63
Cggbp1STRStriatum18.17
11.93
Cggbp1STRdStriatum dorsal region18.03
11.96
Cggbp1STRvStriatum ventral region17.73
11.33
Cggbp1THThalamus10.83
8.17
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00010922 11 110 120 MCLEANIPLEK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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