Annotation Detail for SSH2
Basic Information Top
| Gene Symbol: | SSH2 ( KIAA1725,MGC78588,SSH-2 ) |
|---|---|
| Gene Full Name: | slingshot homolog 2 (Drosophila) |
| Band: | 17q11.2 |
| Quick Links | Entrez ID:85464; OMIM: 606779; Uniprot ID:SSH2_HUMAN; ENSEMBL ID: ENSG00000141298; HGNC ID: 30580 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.654754
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 18 / 564012 | 31 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 66 / 1939121 | 34 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 7 / 136302 | 51 |  |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 18 / 95842 | 187 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 6 / 71755 | 83 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 97 / 3360307 | 28 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 17 / 123478 | 137 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 42 / 1100989 | 38 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 5 / 211054 | 23 | |
| heart | 1 / 89626 | 11 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 1 / 24145 | 41 | |
| liver | 2 / 207743 | 9 | |
| lung | 10 / 336974 | 29 | |
| lymph | 5 / 44270 | 112 | |
| lymph node | 10 / 91610 | 109 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 6 / 107715 | 55 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 4 / 41328 | 96 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 6 / 210574 | 28 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 2 / 96619 | 20 | |
| testis | 8 / 330442 | 24 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_8148_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.65 ± 0.63 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.67 ± 0.41 | |
| Basal Part of Pons | 4.44 ± 0.47 | |
| Cerebellar Cortex | 4.81 ± 0.33 | |
| Cerebellar Nuclei | 4.19 ± 0.58 | |
| Claustrum | 4.07 ± 0.95 | |
| Epithalamus | 4.29 ± 0.64 | |
| Frontal Lobe | 4.6 ± 0.42 | |
| Globus Pallidus | 4.55 ± 0.31 | |
| Hypothalamus | 4.29 ± 0.45 | |
| Insula | 4.71 ± 0.23 | |
| Limbic Lobe | 4.56 ± 0.48 | |
| Mesencephalon | 4.52 ± 0.53 | |
| Myelencephalon | 4.49 ± 0.56 | |
| Occipital Lobe | 4.15 ± 0.53 | |
| Parietal Lobe | 4.49 ± 0.52 | |
| Pontine Tegmentum | 4.5 ± 0.55 | |
| Striatum | 4.09 ± 0.58 | |
| Subthalamus | 4.61 ± 0.24 | |
| Temporal Lobe | 4.66 ± 0.48 | |
| Thalamus | 4.33 ± 0.54 | |
| White Matter | 5.88 ± 0.28 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ssh2 | CB | Cerebellum | 89.41 | |
| 100 | | |||
| Ssh2 | CTX | Cerebral cortex | 100 | |
| 89.55 | | |||
| Ssh2 | HIP | Hippocampal region | 55.3 | |
| 84.22 | | |||
| Ssh2 | HPF | Hippocampal formation | 70.81 | |
| 85.91 | | |||
| Ssh2 | HY | Hypothalamus | 56.5 | |
| 49.18 | | |||
| Ssh2 | LSX | Lateral septal complex | 60.68 | |
| 47.2 | | |||
| Ssh2 | MB | Midbrain | 42.83 | |
| 41.14 | | |||
| Ssh2 | MY | Medulla | 50.64 | |
| 50.04 | | |||
| Ssh2 | OLF | Olfactory bulb | 93.19 | |
| 93.32 | | |||
| Ssh2 | P | Pons | 52.28 | |
| 55.87 | | |||
| Ssh2 | PAL | Pallidum | 75.36 | |
| 71.26 | | |||
| Ssh2 | RHP | Retrohippocampal region | 99.68 | |
| 91.07 | | |||
| Ssh2 | sAMY | Striatum-like amygdalar nuclei | 69.04 | |
| 52.97 | | |||
| Ssh2 | STR | Striatum | 100 | |
| 87.37 | | |||
| Ssh2 | STRd | Striatum dorsal region | 100 | |
| 91.77 | | |||
| Ssh2 | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| Ssh2 | TH | Thalamus | 34.1 | |
| 29.34 | |