Annotation Detail for GFM1
Basic Information Top
| Gene Symbol: | GFM1 ( COXPD1,EFG,EFG1,EFGM,EGF1,FLJ12662,FLJ13632,FLJ20773,GFM,hEFG1 ) |
|---|---|
| Gene Full Name: | G elongation factor, mitochondrial 1 |
| Band: | 3q25.32 |
| Quick Links | Entrez ID:85476; OMIM: 606639; Uniprot ID:EFGM_HUMAN; ENSEMBL ID: ENSG00000168827; HGNC ID: 13780 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.518355
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 3 / 62319 | 48 | |
| fetus | 42 / 564012 | 74 |  |
| neonate | 5 / 31097 | 160 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 8 / 55556 | 143 | |
| adult | 120 / 1939121 | 61 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 9 / 82823 | 108 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 2 / 17290 | 115 | |
| gastrointestinal tumor | 10 / 119369 | 83 | |
| germ cell tumor | 21 / 263845 | 79 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 26 / 136302 | 190 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 5 / 95842 | 52 | |
| liver tumor | 5 / 96359 | 51 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 5 / 71755 | 69 | |
| non-neoplasia | 7 / 97250 | 71 | |
| normal | 305 / 3360307 | 90 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 |  |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 12 / 124949 | 96 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 9 / 90257 | 99 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 6 / 40015 | 149 | |
| bladder | 5 / 29757 | 168 | |
| blood | 12 / 123478 | 97 | |
| bone | 7 / 71655 | 97 | |
| bone marrow | 7 / 48801 | 143 | |
| brain | 159 / 1100989 | 144 | |
| cervix | 4 / 48171 | 83 | |
| connective tissue | 8 / 149255 | 53 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 9 / 215722 | 41 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 6 / 211054 | 28 | |
| heart | 5 / 89626 | 55 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 34 / 211777 | 160 | |
| larynx | 2 / 24145 | 82 | |
| liver | 11 / 207743 | 52 | |
| lung | 18 / 336974 | 53 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 11 / 91610 | 120 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 25 / 67052 | 372 |  |
| muscle | 5 / 107715 | 46 | |
| nerve | 3 / 15768 | 190 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 21 / 280825 | 74 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 19 / 210574 | 90 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 5 / 96619 | 51 | |
| testis | 70 / 330442 | 211 | |
| thymus | 7 / 81131 | 86 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 22 / 52413 | 419 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 19 / 232878 | 81 | |
| vascular | 5 / 51780 | 96 | |
Microarray in - Probe name: CUST_6200_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.43 ± 0.37 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.62 ± 0.08 | |
| Basal Part of Pons | 7.75 ± 0.14 | |
| Cerebellar Cortex | 7.91 ± 0.13 | |
| Cerebellar Nuclei | 8.03 ± 0.24 | |
| Claustrum | 7.76 ± 0.38 | |
| Epithalamus | 7.45 ± 0.39 | |
| Frontal Lobe | 7.67 ± 0.27 | |
| Globus Pallidus | 7.56 ± 0.21 | |
| Hypothalamus | 7.76 ± 0.09 | |
| Insula | 7.56 ± 0.2 | |
| Limbic Lobe | 7.63 ± 0.24 | |
| Mesencephalon | 7.72 ± 0.36 | |
| Myelencephalon | 7.64 ± 0.28 | |
| Occipital Lobe | 7.83 ± 0.18 | |
| Parietal Lobe | 7.76 ± 0.23 | |
| Pontine Tegmentum | 7.7 ± 0.29 | |
| Striatum | 7.24 ± 0.21 | |
| Subthalamus | 7.65 ± 0.42 | |
| Temporal Lobe | 7.65 ± 0.25 | |
| Thalamus | 7.8 ± 0.22 | |
| White Matter | 7.76 ± 0.23 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Gfm1 | CB | Cerebellum | 16.69 | |
| 28.37 | | |||
| Gfm1 | CTX | Cerebral cortex | 42.05 | |
| 34.31 | | |||
| Gfm1 | HIP | Hippocampal region | 29.88 | |
| 45.62 | | |||
| Gfm1 | HPF | Hippocampal formation | 30.94 | |
| 36.91 | | |||
| Gfm1 | HY | Hypothalamus | 13.49 | |
| 11.54 | | |||
| Gfm1 | LSX | Lateral septal complex | 2.79 | |
| 1.9 | | |||
| Gfm1 | MB | Midbrain | 24.01 | |
| 25.4 | | |||
| Gfm1 | MY | Medulla | 22.33 | |
| 33.51 | | |||
| Gfm1 | OLF | Olfactory bulb | 21.58 | |
| 17.09 | | |||
| Gfm1 | P | Pons | 26.24 | |
| 35.89 | | |||
| Gfm1 | PAL | Pallidum | 27.18 | |
| 28.38 | | |||
| Gfm1 | RHP | Retrohippocampal region | 33.2 | |
| 27.54 | | |||
| Gfm1 | sAMY | Striatum-like amygdalar nuclei | 26.08 | |
| 21.74 | | |||
| Gfm1 | STR | Striatum | 14.7 | |
| 11.43 | | |||
| Gfm1 | STRd | Striatum dorsal region | 11.82 | |
| 9.24 | | |||
| Gfm1 | STRv | Striatum ventral region | 23.1 | |
| 16.1 | | |||
| Gfm1 | TH | Thalamus | 40.82 | |
| 39.24 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00005816 | 12 | 48 | 59 | NIGISAHIDSGK | Peptide Atlas |