Annotation Detail for CADPS
Basic Information Top
Gene Symbol: | CADPS ( CADPS1,CAPS,CAPS1,KIAA1121 ) |
---|---|
Gene Full Name: | Ca++-dependent secretion activator |
Band: | 3p14.2 |
Quick Links | Entrez ID:8618; OMIM: 604667; Uniprot ID:CAPS1_HUMAN; ENSEMBL ID: ENSG00000163618; HGNC ID: 1426 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.654933
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 0 / 70761 | 0 | |
blastocyst | 0 / 62319 | 0 | |
fetus | 23 / 564012 | 40 | |
neonate | 0 / 31097 | 0 | |
infant | 2 / 23620 | 84 | |
juvenile | 3 / 55556 | 53 | |
adult | 54 / 1939121 | 27 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adrenal tumor | 0 / 12794 | 0 | |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 1 / 94178 | 10 | |
cervical tumor | 0 / 34366 | 0 | |
chondrosarcoma | 0 / 82823 | 0 | |
colorectal tumor | 2 / 114246 | 17 | |
esophageal tumor | 0 / 17290 | 0 | |
gastrointestinal tumor | 0 / 119369 | 0 | |
germ cell tumor | 7 / 263845 | 26 | |
glioma | 1 / 106883 | 9 | |
head and neck tumor | 0 / 136302 | 0 | |
kidney tumor | 3 / 68959 | 43 | |
leukemia | 0 / 95842 | 0 | |
liver tumor | 0 / 96359 | 0 | |
lung tumor | 0 / 103127 | 0 | |
lymphoma | 1 / 71755 | 13 | |
non-neoplasia | 4 / 97250 | 41 | |
normal | 139 / 3360307 | 41 | |
ovarian tumor | 1 / 76682 | 13 | |
pancreatic tumor | 5 / 104616 | 47 | |
primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
prostate cancer | 1 / 102680 | 9 | |
retinoblastoma | 4 / 46356 | 86 | |
skin tumor | 4 / 124949 | 32 | |
soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
uterine tumor | 1 / 90257 | 11 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adipose tissue | 0 / 13106 | 0 | |
adrenal gland | 2 / 33197 | 60 | |
ascites | 0 / 40015 | 0 | |
bladder | 0 / 29757 | 0 | |
blood | 0 / 123478 | 0 | |
bone | 0 / 71655 | 0 | |
bone marrow | 0 / 48801 | 0 | |
brain | 79 / 1100989 | 71 | |
cervix | 0 / 48171 | 0 | |
connective tissue | 2 / 149255 | 13 | |
ear | 1 / 16212 | 61 | |
embryonic tissue | 1 / 215722 | 4 | |
esophagus | 0 / 20209 | 0 | |
eye | 22 / 211054 | 104 | |
heart | 0 / 89626 | 0 | |
intestine | 3 / 234472 | 12 | |
kidney | 3 / 211777 | 14 | |
larynx | 0 / 24145 | 0 | |
liver | 0 / 207743 | 0 | |
lung | 5 / 336974 | 14 | |
lymph | 1 / 44270 | 22 | |
lymph node | 1 / 91610 | 10 | |
mammary gland | 1 / 153271 | 6 | |
mouth | 0 / 67052 | 0 | |
muscle | 0 / 107715 | 0 | |
nerve | 3 / 15768 | 190 | |
ovary | 1 / 102051 | 9 | |
pancreas | 13 / 214812 | 60 | |
parathyroid | 0 / 20539 | 0 | |
pharynx | 0 / 41328 | 0 | |
pituitary gland | 2 / 16585 | 120 | |
placenta | 0 / 280825 | 0 | |
prostate | 4 / 189345 | 21 | |
salivary gland | 0 / 20155 | 0 | |
skin | 4 / 210574 | 18 | |
spleen | 2 / 53952 | 37 | |
stomach | 0 / 96619 | 0 | |
testis | 3 / 330442 | 9 | |
thymus | 0 / 81131 | 0 | |
thyroid | 0 / 47473 | 0 | |
tonsil | 0 / 16999 | 0 | |
trachea | 0 / 52413 | 0 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 1 / 232878 | 4 | |
vascular | 1 / 51780 | 19 |
- Microarray Platform: Primary tumors (U95A)
- Affymatrix Probe ID: 31848_at
Cell line | Expression level | Expression bar |
---|---|---|
Pr1T | 5.203 | |
Pr4T | 7.452 | |
Pr5T | 5.915 | |
Pr7T | 375.298 | |
Pr1N | 6.797 | |
Pr5N | 6.466 | |
Pr6T | 7.827 | |
Pr3N | 6.373 | |
Pr3T | 6.898 | |
Pr4N | 6.436 | |
Pr2N | 17.75 | |
Pr8N | 6.487 | |
Pr8T | 7.097 | |
Pr9N | 18.902 | |
Pr10N | 6.935 | |
Pr10T | 6.835 | |
Pr9T | 5.949 | |
Pr11T | 6.821 | |
Pr12T | 6.782 | |
Pr13AT | 6.716 | |
Pr13BT | 6.465 | |
Pr21T | 10.676 | |
Pr22T | 6.568 | |
Pr30T | 7.731 | |
Pr23T | 7.448 | |
Pr19T | 7.183 | |
Pr26T | 6.848 | |
Pr31T | 7.214 | |
Pr16T | 7.059 | |
Pr17T | 977.911 | |
Pr24T | 6.336 | |
Pr27T | 105.627 | |
Pr29T | 27.511 | |
OVR102 | 6.666 | |
HUOVR | 6.375 | |
G2 | 7.754 | |
G3 | 7.336 | |
G5 | 7.372 | |
G6 | 6.904 | |
G8 | 6.366 | |
G9 | 6.769 | |
CO7T | 7.641 | |
CO8T | 6.473 | |
CO15T | 8.169 | |
CO27T | 8.487 | |
CO30T | 7.862 | |
CO32T | 7.048 | |
CO40T | 19.736 | |
CO52N | 8.866 | |
CO62N | 7.866 | |
K1 | 6.31 | |
K2 | 6.379 | |
K3 | 5.649 | |
K4 | 6.871 | |
K14N | 8.512 | |
K16 | 6.953 | |
K17 | 8.402 | |
K19 | 6.938 | |
K20 | 6.921 | |
K22 | 6.691 | |
CO9T | 6.973 | |
CO20T | 13.917 | |
CO24T | 7.761 | |
CO36N | 8.345 | |
K18 | 6.473 | |
P1N | 413.764 | |
P2N | 81.737 | |
P5N | 76.361 | |
P8 | 6.787 | |
P11 | 6.212 | |
P17 | 9.829 | |
K21 | 7.455 | |
K25N | 7.86 | |
K28N | 8.49 | |
CO42T | 55.04 | |
P22 | 5.934 | |
P13N | 6.434 | |
LU11T | 6.937 | |
LU16T | 7.514 | |
LU7T | 6.621 | |
LU8T | 6.686 | |
LU12T | 7.035 | |
LU13T | 7.552 | |
LU5T | 7.681 | |
LU6T | 8.475 | |
LU14T | 7.186 | |
LU17T | 7.506 | |
LU50N | 6.196 | |
LU52N | 7.266 | |
LU18T | 7.205 | |
LU55N | 7.504 | |
LU3N | 7.951 | |
P16B | 8.845 | |
P23 | 6.537 | |
OVR16 | 6.49 | |
OVR19 | 98.859 | |
OVR27 | 6.539 | |
OVR28 | 6.372 | |
OVR278E | 7.149 | |
OVR2 | 6.472 | |
OVR5 | 6.457 | |
OVR8 | 7.253 | |
OVR11 | 45.173 | |
OVR12 | 6.998 | |
OVR13 | 6.557 | |
OVR22 | 7.493 | |
OVR26 | 7.457 | |
OVR10 | 8.189 | |
OVR278S | 7.989 | |
OVR1 | 6.906 | |
LU19T | 6.994 | |
LU20T | 6.887 | |
LU24T | 7.174 | |
LU25T | 7.088 | |
LU31T | 8.562 | |
LU34T | 7.73 | |
LU39T | 5.996 | |
CO14T | 7.619 | |
CO21T | 8.806 | |
CO23T | 7.548 | |
CO41N | 6.757 | |
LU40T | 8.201 | |
LU41T | 6.47 | |
LU44T | 7.163 | |
LU46T | 7.147 | |
LU49T | 7.047 | |
L5N | 7.545 | |
LU42T | 7.199 | |
LU30T | 7.553 | |
LU43T | 9.061 | |
CO5T | 7.624 | |
CO44T | 6.717 | |
CO49T | 9.117 | |
CO51T | 7.543 | |
CO56T | 24.199 | |
CO61T | 6.833 | |
LU26T | 7.824 | |
LU33T | 8.456 | |
LU36T | 6.821 | |
CO43T | 7.852 | |
G18 | 7.732 | |
G46 | 6.817 | |
L11T | 8.416 | |
L13N | 7.792 | |
L30T | 7.959 | |
L31T | 8.183 | |
L32T | 8.748 | |
L34T | 8.456 | |
L35T | 8.838 | |
B1N | 8.428 | |
B5N | 7.051 | |
B8T | 7.313 | |
B10T | 7.188 | |
B14T | 8.128 | |
B16T | 7.066 | |
B17T | 7.299 | |
B1NR | 8.01 | |
B20T | 9.129 | |
B51NR | 8.316 | |
B6T | 9.543 | |
B15T | 10 | |
B21T | 11.142 | |
B29T | 7.408 | |
B31T | 8.499 | |
B32T | 8.812 | |
B24T | 6.997 | |
B46T | 7.039 | |
B34T | 7.551 | |
B36T | 7.363 | |
B37T | 7.838 | |
B38T | 7.379 | |
B39T | 6.499 | |
X102 | 7.264 | |
X116_02 | 7.278 | |
G280 | 6.331 | |
X46 | 6.471 | |
X58 | 6.444 | |
G186 | 7.6 | |
G296 | 7.077 | |
L38T | 7.091 | |
L31T.2 | 6.911 | |
L26N | 7.82 | |
N257ANTR | 7.581 | |
N285BODY | 6.67 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: CUST_7077_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 9.41 ± 0.34 | |
Basal Forebrain | 8.76 ± 0.43 | |
Basal Part of Pons | 9.98 ± 0.26 | |
Cerebellar Cortex | 8.84 ± 0.33 | |
Cerebellar Nuclei | 8.97 ± 0.5 | |
Claustrum | 10.08 ± 0.61 | |
Epithalamus | 7.55 ± 0.98 | |
Frontal Lobe | 9.16 ± 0.52 | |
Globus Pallidus | 8.84 ± 0.49 | |
Hypothalamus | 8.88 ± 0.53 | |
Insula | 9.23 ± 0.23 | |
Limbic Lobe | 9.47 ± 0.4 | |
Mesencephalon | 9.11 ± 0.64 | |
Myelencephalon | 9.02 ± 0.64 | |
Occipital Lobe | 9.48 ± 0.49 | |
Parietal Lobe | 9.22 ± 0.51 | |
Pontine Tegmentum | 8.9 ± 0.42 | |
Striatum | 8.39 ± 0.69 | |
Subthalamus | 9.68 ± 0.11 | |
Temporal Lobe | 9.14 ± 0.3 | |
Thalamus | 9.12 ± 0.43 | |
White Matter | 6.63 ± 0.75 |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Cadps | CB | Cerebellum | 49.38 | |
100 | ||||
Cadps | CTX | Cerebral cortex | 100 | |
100 | ||||
Cadps | HIP | Hippocampal region | 100 | |
100 | ||||
Cadps | HPF | Hippocampal formation | 100 | |
100 | ||||
Cadps | HY | Hypothalamus | 90.92 | |
95.35 | ||||
Cadps | LSX | Lateral septal complex | 100 | |
100 | ||||
Cadps | MB | Midbrain | 100 | |
100 | ||||
Cadps | MY | Medulla | 94.99 | |
100 | ||||
Cadps | OLF | Olfactory bulb | 100 | |
100 | ||||
Cadps | P | Pons | 100 | |
100 | ||||
Cadps | PAL | Pallidum | 90.2 | |
100 | ||||
Cadps | RHP | Retrohippocampal region | 100 | |
100 | ||||
Cadps | sAMY | Striatum-like amygdalar nuclei | 89.94 | |
89.05 | ||||
Cadps | STR | Striatum | 71.15 | |
68.7 | ||||
Cadps | STRd | Striatum dorsal region | 62.15 | |
59.18 | ||||
Cadps | STRv | Striatum ventral region | 66.14 | |
64.33 | ||||
Cadps | TH | Thalamus | 100 | |
100 |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
CAPS1_HUMAN_309 | 14 | 309 | 322 | ELDGRLQMADQIAR | PRIDE |