AutismKB 2.0

Annotation Detail for CDK13


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Basic Information Top
Gene Symbol:CDK13 ( CDC2L,CDC2L5,CHED,FLJ35215,KIAA1791 )
Gene Full Name: cyclin-dependent kinase 13
Band: 7p14.1
Quick LinksEntrez ID:8621; OMIM: 603309; Uniprot ID:CDK13_HUMAN; ENSEMBL ID: ENSG00000065883; HGNC ID: 1733
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst0 / 623190 
fetus55 / 56401297
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult95 / 193912148
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor4 / 9417842
cervical tumor2 / 3436658
chondrosarcoma2 / 8282324
colorectal tumor5 / 11424643
esophageal tumor1 / 1729057
gastrointestinal tumor2 / 11936916
germ cell tumor14 / 26384553
glioma4 / 10688337
head and neck tumor7 / 13630251
kidney tumor1 / 6895914
leukemia11 / 95842114
liver tumor0 / 963590 
lung tumor4 / 10312738
lymphoma1 / 7175513
non-neoplasia3 / 9725030
normal199 / 336030759
ovarian tumor10 / 76682130
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor1 / 1249498
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland2 / 3319760
ascites0 / 400150 
bladder1 / 2975733
blood4 / 12347832
bone4 / 7165555
bone marrow1 / 4880120
brain20 / 110098918
cervix3 / 4817162
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue15 / 21572269
esophagus1 / 2020949
eye14 / 21105466
heart4 / 8962644
intestine15 / 23447263
kidney8 / 21177737
larynx2 / 2414582
liver8 / 20774338
lung17 / 33697450
lymph1 / 4427022
lymph node25 / 91610272
mammary gland11 / 15327171
mouth3 / 6705244
muscle4 / 10771537
nerve1 / 1576863
ovary9 / 10205188
pancreas14 / 21481265
parathyroid1 / 2053948
pharynx3 / 4132872
pituitary gland1 / 1658560
placenta9 / 28082532
prostate6 / 18934531
salivary gland0 / 201550 
skin10 / 21057447
spleen0 / 539520 
stomach1 / 9661910
testis22 / 33044266
thymus7 / 8113186
thyroid3 / 4747363
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord1 / 1368073
uterus7 / 23287830
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207318_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts38.15
Adipocyte11.55
AdrenalCortex10.05
Adrenalgland10.45
Amygdala16.55
Appendix10.85
AtrioventricularNode7.7
BDCA4+_DentriticCells43.15
Bonemarrow8.15
BronchialEpithelialCells13.85
CD105+_Endothelial20.95
CD14+_Monocytes12.4
CD19+_BCells(neg._sel.)81.1
CD33+_Myeloid37.4
CD34+51.6
CD4+_Tcells73.15
CD56+_NKCells70.4
CD71+_EarlyErythroid9.5
CD8+_Tcells101.55
CardiacMyocytes13.05
Caudatenucleus10.45
Cerebellum15.35
CerebellumPeduncles13.55
CiliaryGanglion5.4
CingulateCortex12.3
Colorectaladenocarcinoma15.45
DorsalRootGanglion6.6
FetalThyroid13.6
Fetalbrain17.25
Fetalliver15.7
Fetallung10.4
GlobusPallidus6.4
Heart10.75
Hypothalamus19.35
Kidney8.9
Leukemia_chronicMyelogenousK-56211.65
Leukemia_promyelocytic-HL-6011.45
Leukemialymphoblastic(MOLT-4)14.55
Liver11
Lung13.75
Lymphnode23.45
Lymphoma_burkitts(Daudi)38.45
Lymphoma_burkitts(Raji)15.3
MedullaOblongata10.2
OccipitalLobe9.45
OlfactoryBulb12.25
Ovary6.55
Pancreas9.15
PancreaticIslet10.95
ParietalLobe11.65
Pituitary16.45
Placenta15.55
Pons8.55
PrefrontalCortex36.4
Prostate22.45
Salivarygland9.15
SkeletalMuscle10.75
Skin6.3
SmoothMuscle13.55
Spinalcord11.6
SubthalamicNucleus10.35
SuperiorCervicalGanglion10.95
TemporalLobe10.65
Testis27.65
TestisGermCell18.1
TestisIntersitial14.1
TestisLeydigCell12.2
TestisSeminiferousTubule14.5
Thalamus10.5
Thymus51.8
Thyroid22.5
Tongue12.5
Tonsil31.2
Trachea9.9
TrigeminalGanglion9.8
Uterus32.25
UterusCorpus9.8
WholeBlood112.55
Wholebrain18.35
colon15
pineal_day39.1
pineal_night28.42
retina15.625
small_intestine14.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P178493
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.61 ± 0.35
Basal Forebrain7.65 ± 0.26
Basal Part of Pons7.43 ± 0.17
Cerebellar Cortex7.81 ± 0.14
Cerebellar Nuclei7.42 ± 0.32
Claustrum7.64 ± 0.22
Epithalamus7.61 ± 0.28
Frontal Lobe7.49 ± 0.25
Globus Pallidus7.43 ± 0.31
Hypothalamus7.64 ± 0.26
Insula7.59 ± 0.21
Limbic Lobe7.57 ± 0.21
Mesencephalon7.49 ± 0.3
Myelencephalon7.5 ± 0.25
Occipital Lobe7.68 ± 0.23
Parietal Lobe7.62 ± 0.26
Pontine Tegmentum7.54 ± 0.31
Striatum7.44 ± 0.27
Subthalamus7.53 ± 0.09
Temporal Lobe7.52 ± 0.24
Thalamus7.41 ± 0.27
White Matter7.9 ± 0.24
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cdc2l5CBCerebellum44.15
52.11
Cdc2l5CTXCerebral cortex100
86.58
Cdc2l5HIPHippocampal region51.56
77.35
Cdc2l5HPFHippocampal formation49.82
61.95
Cdc2l5HYHypothalamus39.67
29.97
Cdc2l5LSXLateral septal complex76.86
57.81
Cdc2l5MBMidbrain33.6
28.56
Cdc2l5MYMedulla36.56
35.12
Cdc2l5OLFOlfactory bulb88.11
84.48
Cdc2l5PPons26.07
24.83
Cdc2l5PALPallidum54.01
45.76
Cdc2l5RHPRetrohippocampal region46.79
39.03
Cdc2l5sAMYStriatum-like amygdalar nuclei35.82
26.44
Cdc2l5STRStriatum68.46
51.38
Cdc2l5STRdStriatum dorsal region65.84
50.13
Cdc2l5STRvStriatum ventral region87.9
62.44
Cdc2l5THThalamus59.06
48.08
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00009682 9 840 848 CSNILLNNR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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