AutismKB 2.0

Annotation Detail for SSNA1


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Basic Information Top
Gene Symbol:SSNA1 ( N14,NA-14,NA14 )
Gene Full Name: Sjogren syndrome nuclear autoantigen 1
Band: 9q34.3
Quick LinksEntrez ID:8636; OMIM: 610882; Uniprot ID:SSNA1_HUMAN; ENSEMBL ID: ENSG00000176101; HGNC ID: 11321
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst1 / 6231916
fetus31 / 56401254
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult83 / 193912142
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor6 / 9417863
cervical tumor5 / 34366145
chondrosarcoma4 / 8282348
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor6 / 11936950
germ cell tumor11 / 26384541
glioma7 / 10688365
head and neck tumor2 / 13630214
kidney tumor3 / 6895943
leukemia2 / 9584220
liver tumor1 / 9635910
lung tumor7 / 10312767
lymphoma9 / 71755125
non-neoplasia2 / 9725020
normal117 / 336030734
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer7 / 10268068
retinoblastoma1 / 4635621
skin tumor17 / 124949136
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites1 / 4001524
bladder0 / 297570 
blood4 / 12347832
bone6 / 7165583
bone marrow0 / 488010 
brain24 / 110098921
cervix7 / 48171145
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye15 / 21105471
heart2 / 8962622
intestine7 / 23447229
kidney3 / 21177714
larynx0 / 241450 
liver1 / 2077434
lung17 / 33697450
lymph5 / 44270112
lymph node4 / 9161043
mammary gland7 / 15327145
mouth0 / 670520 
muscle5 / 10771546
nerve1 / 1576863
ovary2 / 10205119
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta19 / 28082567
prostate14 / 18934573
salivary gland1 / 2015549
skin20 / 21057494
spleen0 / 539520 
stomach2 / 9661920
testis11 / 33044233
thymus0 / 811310 
thyroid2 / 4747342
tonsil2 / 16999117
trachea0 / 524130 
umbilical cord0 / 136800 
uterus7 / 23287830
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 210378_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts166.7
Adipocyte49.95
AdrenalCortex32.25
Adrenalgland25.75
Amygdala33
Appendix34.95
AtrioventricularNode23.45
BDCA4+_DentriticCells73.45
Bonemarrow42.1
BronchialEpithelialCells53.6
CD105+_Endothelial66.05
CD14+_Monocytes76.45
CD19+_BCells(neg._sel.)82.75
CD33+_Myeloid57.5
CD34+73.55
CD4+_Tcells60.75
CD56+_NKCells87.3
CD71+_EarlyErythroid99.9
CD8+_Tcells52
CardiacMyocytes53.1
Caudatenucleus31.95
Cerebellum37.85
CerebellumPeduncles58.05
CiliaryGanglion23.05
CingulateCortex58.9
Colorectaladenocarcinoma108.45
DorsalRootGanglion21
FetalThyroid45.75
Fetalbrain36.9
Fetalliver29.6
Fetallung36.75
GlobusPallidus69.05
Heart177.75
Hypothalamus46.5
Kidney43.8
Leukemia_chronicMyelogenousK-56244.15
Leukemia_promyelocytic-HL-6057.55
Leukemialymphoblastic(MOLT-4)69.35
Liver81.65
Lung124.6
Lymphnode38.35
Lymphoma_burkitts(Daudi)56.8
Lymphoma_burkitts(Raji)317.7
MedullaOblongata33.2
OccipitalLobe39.65
OlfactoryBulb29.55
Ovary21.05
Pancreas39.15
PancreaticIslet41.1
ParietalLobe36.9
Pituitary36.1
Placenta39.3
Pons19.4
PrefrontalCortex65.55
Prostate78.5
Salivarygland27.1
SkeletalMuscle35.45
Skin27.65
SmoothMuscle43.35
Spinalcord41.6
SubthalamicNucleus28.4
SuperiorCervicalGanglion38.55
TemporalLobe30.8
Testis157.35
TestisGermCell112.65
TestisIntersitial90.9
TestisLeydigCell68.75
TestisSeminiferousTubule133.6
Thalamus56.15
Thymus62.6
Thyroid60.4
Tongue33.05
Tonsil45.95
Trachea26.75
TrigeminalGanglion28.6
Uterus33.25
UterusCorpus27.65
WholeBlood77.85
Wholebrain76.6
colon35.3
pineal_day52.26
pineal_night43.8
retina43.775
small_intestine31.3
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P159476
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.09 ± 0.26
Basal Forebrain7.41 ± 0.24
Basal Part of Pons7.59 ± 0.32
Cerebellar Cortex7.67 ± 0.27
Cerebellar Nuclei7.67 ± 0.33
Claustrum7.08 ± 0.37
Epithalamus7.2 ± 0.3
Frontal Lobe7.51 ± 0.32
Globus Pallidus7.44 ± 0.14
Hypothalamus7.28 ± 0.23
Insula7.4 ± 0.32
Limbic Lobe7.36 ± 0.32
Mesencephalon7.35 ± 0.39
Myelencephalon7.44 ± 0.33
Occipital Lobe7.14 ± 0.28
Parietal Lobe7.36 ± 0.3
Pontine Tegmentum7.37 ± 0.3
Striatum7.25 ± 0.29
Subthalamus7.3 ± 0.14
Temporal Lobe7.47 ± 0.28
Thalamus7.5 ± 0.24
White Matter8.16 ± 0.29
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ssna1CBCerebellum50.58
81.76
Ssna1CTXCerebral cortex100
98.65
Ssna1HIPHippocampal region95.23
100
Ssna1HPFHippocampal formation100
100
Ssna1HYHypothalamus39.73
34.34
Ssna1LSXLateral septal complex29.36
23.07
Ssna1MBMidbrain61.6
57.98
Ssna1MYMedulla58.39
66.17
Ssna1OLFOlfactory bulb80.21
74.9
Ssna1PPons48.43
52.84
Ssna1PALPallidum25.82
23.03
Ssna1RHPRetrohippocampal region100
100
Ssna1sAMYStriatum-like amygdalar nuclei60.31
48.81
Ssna1STRStriatum44.11
34.7
Ssna1STRdStriatum dorsal region46.68
37.57
Ssna1STRvStriatum ventral region35.73
25.47
Ssna1THThalamus57.11
51.79
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
SSNA1_HUMAN_32 11 32 42 QIQEEEDEKQR PRIDE
SSNA1_HUMAN_49 8 49 56 QLTEKLAR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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