AutismKB 2.0

Annotation Detail for STX10


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Basic Information Top
Gene Symbol:STX10 ( SYN10,hsyn10 )
Gene Full Name: syntaxin 10
Band: 19p13.13
Quick LinksEntrez ID:8677; OMIM: 603765; Uniprot ID:STX10_HUMAN; ENSEMBL ID: ENSG00000104915; HGNC ID: 11428
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst0 / 623190 
fetus23 / 56401240
neonate0 / 310970 
infant1 / 2362042
juvenile1 / 5555617
adult78 / 193912140
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor7 / 9417874
cervical tumor5 / 34366145
chondrosarcoma6 / 8282372
colorectal tumor8 / 11424670
esophageal tumor0 / 172900 
gastrointestinal tumor11 / 11936992
germ cell tumor4 / 26384515
glioma9 / 10688384
head and neck tumor0 / 1363020 
kidney tumor2 / 6895929
leukemia4 / 9584241
liver tumor3 / 9635931
lung tumor19 / 103127184
lymphoma3 / 7175541
non-neoplasia3 / 9725030
normal105 / 336030731
ovarian tumor4 / 7668252
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS13 / 125680103
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor16 / 124949128
soft tissue/muscle tissue tumor9 / 12519171
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue3 / 13106228
adrenal gland0 / 331970 
ascites3 / 4001574
bladder0 / 297570 
blood4 / 12347832
bone6 / 7165583
bone marrow1 / 4880120
brain35 / 110098931
cervix5 / 48171103
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye7 / 21105433
heart0 / 896260 
intestine17 / 23447272
kidney6 / 21177728
larynx0 / 241450 
liver3 / 20774314
lung41 / 336974121
lymph2 / 4427045
lymph node1 / 9161010
mammary gland9 / 15327158
mouth2 / 6705229
muscle3 / 10771527
nerve0 / 157680 
ovary5 / 10205148
pancreas8 / 21481237
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta9 / 28082532
prostate4 / 18934521
salivary gland0 / 201550 
skin21 / 21057499
spleen0 / 539520 
stomach11 / 96619113
testis4 / 33044212
thymus1 / 8113112
thyroid0 / 474730 
tonsil2 / 16999117
trachea0 / 524130 
umbilical cord2 / 13680146
uterus10 / 23287842
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 212625_at
Cell line Expression level Expression bar
721_B_lymphoblasts102.95
Adipocyte109.05
AdrenalCortex59.6
Adrenalgland52.9
Amygdala41.25
Appendix53.5
AtrioventricularNode28.75
BDCA4+_DentriticCells179.15
Bonemarrow85.85
BronchialEpithelialCells59.2
CD105+_Endothelial58.6
CD14+_Monocytes356.55
CD19+_BCells(neg._sel.)92.8
CD33+_Myeloid413.4
CD34+131.65
CD4+_Tcells160.8
CD56+_NKCells139.5
CD71+_EarlyErythroid72.75
CD8+_Tcells112.6
CardiacMyocytes80.8
Caudatenucleus48.6
Cerebellum81.35
CerebellumPeduncles75.75
CiliaryGanglion25.35
CingulateCortex64.4
Colorectaladenocarcinoma88.55
DorsalRootGanglion37.4
FetalThyroid72.8
Fetalbrain52.2
Fetalliver21.65
Fetallung50.05
GlobusPallidus38.35
Heart138.55
Hypothalamus53.75
Kidney36.8
Leukemia_chronicMyelogenousK-56283.2
Leukemia_promyelocytic-HL-6042.45
Leukemialymphoblastic(MOLT-4)163.25
Liver146.8
Lung143.9
Lymphnode57.65
Lymphoma_burkitts(Daudi)82.8
Lymphoma_burkitts(Raji)100.95
MedullaOblongata52
OccipitalLobe40.7
OlfactoryBulb44.05
Ovary17.05
Pancreas41.25
PancreaticIslet34.35
ParietalLobe63.15
Pituitary63.25
Placenta32.55
Pons37.15
PrefrontalCortex57.15
Prostate57.65
Salivarygland41.95
SkeletalMuscle80.75
Skin37.85
SmoothMuscle54.05
Spinalcord56.85
SubthalamicNucleus46.5
SuperiorCervicalGanglion59.4
TemporalLobe40
Testis31.15
TestisGermCell33.5
TestisIntersitial22.2
TestisLeydigCell39.05
TestisSeminiferousTubule41.35
Thalamus38.8
Thymus63.2
Thyroid77.35
Tongue52.7
Tonsil50.25
Trachea45.95
TrigeminalGanglion25.45
Uterus38.95
UterusCorpus73.45
WholeBlood322.95
Wholebrain56.9
colon35.15
pineal_day62.36
pineal_night47.24
retina60.225
small_intestine63.85
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_2344_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.54 ± 0.42
Basal Forebrain5.32 ± 0.33
Basal Part of Pons5.24 ± 0.54
Cerebellar Cortex5.44 ± 0.43
Cerebellar Nuclei5.19 ± 0.44
Claustrum5.8 ± 0.55
Epithalamus5.09 ± 0.23
Frontal Lobe5.13 ± 0.47
Globus Pallidus5.65 ± 0.35
Hypothalamus4.93 ± 0.36
Insula5.1 ± 0.42
Limbic Lobe5.44 ± 0.49
Mesencephalon5.2 ± 0.58
Myelencephalon5.23 ± 0.49
Occipital Lobe5.43 ± 0.52
Parietal Lobe5.22 ± 0.57
Pontine Tegmentum5.25 ± 0.5
Striatum5.17 ± 0.48
Subthalamus5.16 ± 0.52
Temporal Lobe5.23 ± 0.42
Thalamus5.1 ± 0.49
White Matter6.35 ± 0.5
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00039858 14 104 117 DHMVSPTAVAFLER Peptide Atlas
STX10_HUMAN_2 10 2 11 SLEDPFFVVR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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