AutismKB 2.0

Annotation Detail for B4GALT3


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Basic Information Top
Gene Symbol:B4GALT3 ( beta4Gal-T3 )
Gene Full Name: UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3
Band: 1q23.3
Quick LinksEntrez ID:8703; OMIM: 604014; Uniprot ID:B4GT3_HUMAN; ENSEMBL ID: ENSG00000158850; HGNC ID: 926
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst4 / 6231964
fetus53 / 56401293
neonate1 / 3109732
infant11 / 23620465
juvenile13 / 55556233
adult181 / 193912193
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma7 / 17475400
breast (mammary gland) tumor10 / 94178106
cervical tumor4 / 34366116
chondrosarcoma5 / 8282360
colorectal tumor15 / 114246131
esophageal tumor4 / 17290231
gastrointestinal tumor11 / 11936992
germ cell tumor39 / 263845147
glioma12 / 106883112
head and neck tumor8 / 13630258
kidney tumor5 / 6895972
leukemia8 / 9584283
liver tumor8 / 9635983
lung tumor8 / 10312777
lymphoma10 / 71755139
non-neoplasia6 / 9725061
normal329 / 336030797
ovarian tumor5 / 7668265
pancreatic tumor8 / 10461676
primitive neuroectodermal tumor of the CNS46 / 125680366
prostate cancer4 / 10268038
retinoblastoma12 / 46356258
skin tumor31 / 124949248
soft tissue/muscle tissue tumor8 / 12519163
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites4 / 4001599
bladder3 / 29757100
blood14 / 123478113
bone1 / 7165513
bone marrow1 / 4880120
brain127 / 1100989115
cervix10 / 48171207
connective tissue10 / 14925566
ear0 / 162120 
embryonic tissue14 / 21572264
esophagus4 / 20209197
eye23 / 211054108
heart10 / 89626111
intestine31 / 234472132
kidney15 / 21177770
larynx3 / 24145124
liver13 / 20774362
lung31 / 33697491
lymph5 / 44270112
lymph node4 / 9161043
mammary gland15 / 15327197
mouth3 / 6705244
muscle11 / 107715102
nerve1 / 1576863
ovary9 / 10205188
pancreas19 / 21481288
parathyroid0 / 205390 
pharynx4 / 4132896
pituitary gland1 / 1658560
placenta38 / 280825135
prostate12 / 18934563
salivary gland1 / 2015549
skin40 / 210574189
spleen5 / 5395292
stomach4 / 9661941
testis38 / 330442114
thymus10 / 81131123
thyroid5 / 47473105
tonsil3 / 16999176
trachea1 / 5241319
umbilical cord0 / 136800 
uterus12 / 23287851
vascular4 / 5178077
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 210243_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts76.55
Adipocyte22.35
AdrenalCortex23.4
Adrenalgland20.05
Amygdala12.65
Appendix34.05
AtrioventricularNode11.35
BDCA4+_DentriticCells234.9
Bonemarrow50.5
BronchialEpithelialCells20.1
CD105+_Endothelial41.5
CD14+_Monocytes45.4
CD19+_BCells(neg._sel.)102.5
CD33+_Myeloid100.15
CD34+110.55
CD4+_Tcells110.95
CD56+_NKCells93.6
CD71+_EarlyErythroid103.65
CD8+_Tcells128.75
CardiacMyocytes23.7
Caudatenucleus29
Cerebellum20.7
CerebellumPeduncles30
CiliaryGanglion16.4
CingulateCortex17.5
Colorectaladenocarcinoma18.25
DorsalRootGanglion14.15
FetalThyroid27.2
Fetalbrain34.6
Fetalliver33.55
Fetallung51.1
GlobusPallidus14.8
Heart32.25
Hypothalamus26.95
Kidney23.85
Leukemia_chronicMyelogenousK-56283.65
Leukemia_promyelocytic-HL-6029
Leukemialymphoblastic(MOLT-4)18.95
Liver23.8
Lung45.75
Lymphnode46.1
Lymphoma_burkitts(Daudi)82
Lymphoma_burkitts(Raji)90.75
MedullaOblongata21.25
OccipitalLobe26.55
OlfactoryBulb18.8
Ovary22.7
Pancreas19.15
PancreaticIslet51.25
ParietalLobe17.7
Pituitary43.35
Placenta128.05
Pons19.9
PrefrontalCortex14.2
Prostate47.05
Salivarygland16.4
SkeletalMuscle18.2
Skin22.95
SmoothMuscle26.95
Spinalcord16.3
SubthalamicNucleus17.75
SuperiorCervicalGanglion21.15
TemporalLobe25.6
Testis45.45
TestisGermCell26.55
TestisIntersitial21.9
TestisLeydigCell27.1
TestisSeminiferousTubule36.7
Thalamus21.2
Thymus36.95
Thyroid62.95
Tongue11.9
Tonsil18.95
Trachea27.55
TrigeminalGanglion23.45
Uterus17.35
UterusCorpus14.05
WholeBlood20.3
Wholebrain34.95
colon16.7
pineal_day52.26
pineal_night48.26
retina47.2
small_intestine9.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_11898_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.84 ± 0.74
Basal Forebrain5.65 ± 0.31
Basal Part of Pons5.27 ± 0.56
Cerebellar Cortex5.73 ± 0.51
Cerebellar Nuclei5.31 ± 0.44
Claustrum6.14 ± 0.74
Epithalamus5.67 ± 0.6
Frontal Lobe5.5 ± 0.52
Globus Pallidus5.56 ± 0.52
Hypothalamus5.57 ± 0.56
Insula5.58 ± 0.36
Limbic Lobe5.67 ± 0.5
Mesencephalon5.67 ± 0.59
Myelencephalon5.56 ± 0.57
Occipital Lobe5.47 ± 0.49
Parietal Lobe5.55 ± 0.51
Pontine Tegmentum5.57 ± 0.5
Striatum5.69 ± 0.49
Subthalamus5.71 ± 0.8
Temporal Lobe5.57 ± 0.55
Thalamus5.41 ± 0.49
White Matter4.99 ± 0.38
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
B4galt3CBCerebellum19.96
25.68
B4galt3CTXCerebral cortex55.87
44.23
B4galt3HIPHippocampal region49.02
67.46
B4galt3HPFHippocampal formation52.12
60.38
B4galt3HYHypothalamus34.29
27.71
B4galt3LSXLateral septal complex34.67
24.71
B4galt3MBMidbrain20.21
17.77
B4galt3MYMedulla27.09
27.16
B4galt3OLFOlfactory bulb43.84
36.68
B4galt3PPons21.76
22.75
B4galt3PALPallidum28.11
24.68
B4galt3RHPRetrohippocampal region58.35
50.73
B4galt3sAMYStriatum-like amygdalar nuclei32.54
26.11
B4galt3STRStriatum30.37
22.45
B4galt3STRdStriatum dorsal region29.22
21.47
B4galt3STRvStriatum ventral region32.81
23.69
B4galt3THThalamus36.19
31.46
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00041552 12 140 151 LLLYHLHPFLQR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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