AutismKB 2.0

Annotation Detail for C19orf2


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:C19orf2 ( FLJ10575,NNX3,RMP,URI )
Gene Full Name: chromosome 19 open reading frame 2
Band: 19q12
Quick LinksEntrez ID:8725; OMIM: 603494; Uniprot ID:RMP_HUMAN; ENSEMBL ID: ENSG00000105176; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst1 / 6231916
fetus21 / 56401237
neonate0 / 310970 
infant1 / 2362042
juvenile5 / 5555689
adult110 / 193912156
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma2 / 17475114
breast (mammary gland) tumor6 / 9417863
cervical tumor1 / 3436629
chondrosarcoma9 / 82823108
colorectal tumor11 / 11424696
esophageal tumor0 / 172900 
gastrointestinal tumor9 / 11936975
germ cell tumor14 / 26384553
glioma4 / 10688337
head and neck tumor3 / 13630222
kidney tumor5 / 6895972
leukemia6 / 9584262
liver tumor5 / 9635951
lung tumor1 / 1031279
lymphoma4 / 7175555
non-neoplasia1 / 9725010
normal135 / 336030740
ovarian tumor15 / 76682195
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer4 / 10268038
retinoblastoma2 / 4635643
skin tumor5 / 12494940
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites4 / 4001599
bladder2 / 2975767
blood6 / 12347848
bone14 / 71655195
bone marrow1 / 4880120
brain18 / 110098916
cervix2 / 4817141
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus1 / 2020949
eye16 / 21105475
heart1 / 8962611
intestine18 / 23447276
kidney19 / 21177789
larynx0 / 241450 
liver9 / 20774343
lung16 / 33697447
lymph2 / 4427045
lymph node5 / 9161054
mammary gland8 / 15327152
mouth2 / 6705229
muscle5 / 10771546
nerve0 / 157680 
ovary15 / 102051146
pancreas3 / 21481213
parathyroid2 / 2053997
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta13 / 28082546
prostate3 / 18934515
salivary gland0 / 201550 
skin15 / 21057471
spleen3 / 5395255
stomach4 / 9661941
testis17 / 33044251
thymus5 / 8113161
thyroid4 / 4747384
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus15 / 23287864
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 211563_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts39.5
Adipocyte22.8
AdrenalCortex25.9
Adrenalgland19
Amygdala41.65
Appendix27.3
AtrioventricularNode17.65
BDCA4+_DentriticCells25.8
Bonemarrow22.3
BronchialEpithelialCells22.55
CD105+_Endothelial23.1
CD14+_Monocytes23.8
CD19+_BCells(neg._sel.)26.95
CD33+_Myeloid33.5
CD34+34.95
CD4+_Tcells44.75
CD56+_NKCells26.3
CD71+_EarlyErythroid19.65
CD8+_Tcells43.55
CardiacMyocytes38.25
Caudatenucleus20.35
Cerebellum18.45
CerebellumPeduncles26.3
CiliaryGanglion17.05
CingulateCortex23.3
Colorectaladenocarcinoma25.05
DorsalRootGanglion20.3
FetalThyroid22.9
Fetalbrain22.1
Fetalliver20.45
Fetallung18.8
GlobusPallidus17.15
Heart29.4
Hypothalamus25
Kidney18.45
Leukemia_chronicMyelogenousK-56220.25
Leukemia_promyelocytic-HL-6021.6
Leukemialymphoblastic(MOLT-4)18.65
Liver31.35
Lung24
Lymphnode19.7
Lymphoma_burkitts(Daudi)30.8
Lymphoma_burkitts(Raji)33.6
MedullaOblongata20.75
OccipitalLobe20.95
OlfactoryBulb18
Ovary16.4
Pancreas19.05
PancreaticIslet24.7
ParietalLobe24.25
Pituitary27.25
Placenta22.9
Pons22.15
PrefrontalCortex28.05
Prostate26.5
Salivarygland18.45
SkeletalMuscle30.15
Skin18.35
SmoothMuscle43.7
Spinalcord24.45
SubthalamicNucleus20.85
SuperiorCervicalGanglion38.1
TemporalLobe21.95
Testis19.4
TestisGermCell18.6
TestisIntersitial19.5
TestisLeydigCell23.8
TestisSeminiferousTubule19.75
Thalamus23.7
Thymus17.3
Thyroid37.15
Tongue23.05
Tonsil22.75
Trachea19.1
TrigeminalGanglion24
Uterus18.6
UterusCorpus20.85
WholeBlood24.5
Wholebrain18.9
colon23.1
pineal_day28.94
pineal_night37.12
retina27.675
small_intestine21.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_2394_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.36 ± 0.27
Basal Forebrain6.57 ± 0.28
Basal Part of Pons6.29 ± 0.32
Cerebellar Cortex6.68 ± 0.21
Cerebellar Nuclei6.31 ± 0.36
Claustrum6.31 ± 0.39
Epithalamus6.6 ± 0.25
Frontal Lobe6.29 ± 0.31
Globus Pallidus6.88 ± 0.43
Hypothalamus6.37 ± 0.4
Insula6.11 ± 0.37
Limbic Lobe6.27 ± 0.34
Mesencephalon6.39 ± 0.33
Myelencephalon6.34 ± 0.39
Occipital Lobe6.3 ± 0.27
Parietal Lobe6.32 ± 0.35
Pontine Tegmentum6.39 ± 0.32
Striatum6.43 ± 0.44
Subthalamus6.51 ± 0.24
Temporal Lobe6.27 ± 0.34
Thalamus6.38 ± 0.32
White Matter7.18 ± 0.38
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
C80913CBCerebellum22.95
27.74
C80913CTXCerebral cortex58.19
44.65
C80913HIPHippocampal region35.8
46.57
C80913HPFHippocampal formation43.04
46.73
C80913HYHypothalamus26.27
20.05
C80913LSXLateral septal complex21.55
19.12
C80913MBMidbrain20
17.11
C80913MYMedulla22.75
23.24
C80913OLFOlfactory bulb44.7
40.05
C80913PPons21.07
21.02
C80913PALPallidum24.73
21.9
C80913RHPRetrohippocampal region56.77
49
C80913sAMYStriatum-like amygdalar nuclei35.28
24.04
C80913STRStriatum28.02
20.49
C80913STRdStriatum dorsal region26.81
19.72
C80913STRvStriatum ventral region32.06
22.21
C80913THThalamus25.06
19.57
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00042530 27 400 426 SISCEEATCSDTSESILEEEPQENQKK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved