AutismKB 2.0

Annotation Detail for CTNNAL1


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Basic Information Top
Gene Symbol:CTNNAL1 ( CLLP,FLJ08121,alpha-CATU )
Gene Full Name: catenin (cadherin-associated protein), alpha-like 1
Band: 9q31.3
Quick LinksEntrez ID:8727; OMIM: 604785; Uniprot ID:CTNL1_HUMAN; ENSEMBL ID: ENSG00000119326; HGNC ID: 2512
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body7 / 7076198
blastocyst4 / 6231964
fetus35 / 56401262
neonate3 / 3109796
infant0 / 236200 
juvenile14 / 55556251
adult119 / 193912161
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma2 / 17475114
breast (mammary gland) tumor2 / 9417821
cervical tumor4 / 34366116
chondrosarcoma5 / 8282360
colorectal tumor3 / 11424626
esophageal tumor1 / 1729057
gastrointestinal tumor5 / 11936941
germ cell tumor19 / 26384572
glioma11 / 106883102
head and neck tumor3 / 13630222
kidney tumor5 / 6895972
leukemia6 / 9584262
liver tumor14 / 96359145
lung tumor6 / 10312758
lymphoma2 / 7175527
non-neoplasia4 / 9725041
normal219 / 336030765
ovarian tumor3 / 7668239
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS8 / 12568063
prostate cancer7 / 10268068
retinoblastoma3 / 4635664
skin tumor7 / 12494956
soft tissue/muscle tissue tumor14 / 125191111
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland8 / 33197240
ascites1 / 4001524
bladder0 / 297570 
blood9 / 12347872
bone3 / 7165541
bone marrow2 / 4880140
brain33 / 110098929
cervix4 / 4817183
connective tissue9 / 14925560
ear5 / 16212308
embryonic tissue14 / 21572264
esophagus1 / 2020949
eye15 / 21105471
heart10 / 89626111
intestine6 / 23447225
kidney24 / 211777113
larynx0 / 241450 
liver22 / 207743105
lung24 / 33697471
lymph1 / 4427022
lymph node4 / 9161043
mammary gland4 / 15327126
mouth0 / 670520 
muscle0 / 1077150 
nerve2 / 15768126
ovary4 / 10205139
pancreas5 / 21481223
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta28 / 28082599
prostate13 / 18934568
salivary gland0 / 201550 
skin16 / 21057475
spleen3 / 5395255
stomach7 / 9661972
testis46 / 330442139
thymus2 / 8113124
thyroid5 / 47473105
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord1 / 1368073
uterus19 / 23287881
vascular8 / 51780154
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202468_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts149.1
Adipocyte45.65
AdrenalCortex364.85
Adrenalgland130.6
Amygdala8.5
Appendix14.7
AtrioventricularNode30.65
BDCA4+_DentriticCells8.45
Bonemarrow8.55
BronchialEpithelialCells254.4
CD105+_Endothelial175.3
CD14+_Monocytes9
CD19+_BCells(neg._sel.)8.3
CD33+_Myeloid10.05
CD34+46.35
CD4+_Tcells9.25
CD56+_NKCells10.1
CD71+_EarlyErythroid297.9
CD8+_Tcells7.1
CardiacMyocytes62.2
Caudatenucleus8.6
Cerebellum7.95
CerebellumPeduncles13.7
CiliaryGanglion28.25
CingulateCortex12.95
Colorectaladenocarcinoma187.4
DorsalRootGanglion117.2
FetalThyroid77.9
Fetalbrain10.8
Fetalliver41.65
Fetallung109.2
GlobusPallidus8.9
Heart12.25
Hypothalamus11.35
Kidney8.05
Leukemia_chronicMyelogenousK-56269.9
Leukemia_promyelocytic-HL-6069.15
Leukemialymphoblastic(MOLT-4)147.85
Liver10.25
Lung10.3
Lymphnode16.2
Lymphoma_burkitts(Daudi)68.1
Lymphoma_burkitts(Raji)15.1
MedullaOblongata8.85
OccipitalLobe10.55
OlfactoryBulb551.25
Ovary41.6
Pancreas9.5
PancreaticIslet13.75
ParietalLobe11.5
Pituitary30.1
Placenta10.65
Pons10.95
PrefrontalCortex23.1
Prostate14.5
Salivarygland9.55
SkeletalMuscle12.25
Skin22.85
SmoothMuscle110.25
Spinalcord27.25
SubthalamicNucleus16.45
SuperiorCervicalGanglion12.95
TemporalLobe13.1
Testis14.95
TestisGermCell149.65
TestisIntersitial85.4
TestisLeydigCell65
TestisSeminiferousTubule57.95
Thalamus11.2
Thymus7.35
Thyroid437.35
Tongue13.35
Tonsil11.4
Trachea9.5
TrigeminalGanglion27.3
Uterus42.55
UterusCorpus10.95
WholeBlood8.25
Wholebrain7.35
colon9.75
pineal_day37.76
pineal_night32.94
retina28.95
small_intestine8.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_6743_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.24 ± 0.61
Basal Forebrain4.36 ± 0.71
Basal Part of Pons4.31 ± 0.56
Cerebellar Cortex4.63 ± 0.4
Cerebellar Nuclei4.46 ± 0.52
Claustrum5.27 ± 0.84
Epithalamus5.13 ± 0.48
Frontal Lobe4.65 ± 0.42
Globus Pallidus4.24 ± 0.89
Hypothalamus4.72 ± 0.34
Insula5.02 ± 0.37
Limbic Lobe4.61 ± 0.62
Mesencephalon4.64 ± 0.64
Myelencephalon4.75 ± 0.63
Occipital Lobe5.6 ± 0.55
Parietal Lobe5.02 ± 0.52
Pontine Tegmentum5.06 ± 0.53
Striatum4.04 ± 0.72
Subthalamus4.54 ± 0.25
Temporal Lobe5.09 ± 0.42
Thalamus4.49 ± 0.61
White Matter3.38 ± 0.45
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ctnnal1CBCerebellum5.34
6.51
Ctnnal1CTXCerebral cortex16.67
11.27
Ctnnal1HIPHippocampal region4.19
3.47
Ctnnal1HPFHippocampal formation4.12
3.23
Ctnnal1HYHypothalamus9.12
7.01
Ctnnal1LSXLateral septal complex1.55
1.29
Ctnnal1MBMidbrain10.88
8.64
Ctnnal1MYMedulla16.44
17.97
Ctnnal1OLFOlfactory bulb30.72
22.33
Ctnnal1PPons16.31
16.11
Ctnnal1PALPallidum9.8
7.86
Ctnnal1RHPRetrohippocampal region3.95
2.88
Ctnnal1sAMYStriatum-like amygdalar nuclei6.41
4.94
Ctnnal1STRStriatum8.26
5.66
Ctnnal1STRdStriatum dorsal region6.54
4.5
Ctnnal1STRvStriatum ventral region19.3
12.13
Ctnnal1THThalamus22.12
16.09
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00502056 15 329 343 MEDFTDSAYTSHEHR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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