AutismKB 2.0

Annotation Detail for TRIM24


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Basic Information Top
Gene Symbol:TRIM24 ( PTC6,RNF82,TF1A,TIF1,TIF1A,TIF1ALPHA,hTIF1 )
Gene Full Name: tripartite motif-containing 24
Band: 7q33-q34
Quick LinksEntrez ID:8805; OMIM: 603406; Uniprot ID:TIF1A_HUMAN; ENSEMBL ID: ENSG00000122779; HGNC ID: 11812
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst15 / 62319240
fetus31 / 56401254
neonate0 / 310970 
infant0 / 236200 
juvenile14 / 55556251
adult81 / 193912141
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor4 / 11424635
esophageal tumor0 / 172900 
gastrointestinal tumor7 / 11936958
germ cell tumor21 / 26384579
glioma9 / 10688384
head and neck tumor5 / 13630236
kidney tumor3 / 6895943
leukemia2 / 9584220
liver tumor19 / 96359197
lung tumor1 / 1031279
lymphoma1 / 7175513
non-neoplasia1 / 9725010
normal124 / 336030736
ovarian tumor4 / 7668252
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer5 / 10268048
retinoblastoma4 / 4635686
skin tumor2 / 12494916
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland3 / 3319790
ascites5 / 40015124
bladder0 / 297570 
blood3 / 12347824
bone2 / 7165527
bone marrow2 / 4880140
brain40 / 110098936
cervix0 / 481710 
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue30 / 215722139
esophagus0 / 202090 
eye6 / 21105428
heart1 / 8962611
intestine6 / 23447225
kidney7 / 21177733
larynx3 / 24145124
liver22 / 207743105
lung6 / 33697417
lymph0 / 442700 
lymph node1 / 9161010
mammary gland11 / 15327171
mouth2 / 6705229
muscle3 / 10771527
nerve0 / 157680 
ovary3 / 10205129
pancreas1 / 2148124
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta12 / 28082542
prostate9 / 18934547
salivary gland0 / 201550 
skin3 / 21057414
spleen0 / 539520 
stomach3 / 9661931
testis41 / 330442124
thymus6 / 8113173
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus4 / 23287817
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204391_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts20.95
Adipocyte9.35
AdrenalCortex23.45
Adrenalgland8.55
Amygdala10.1
Appendix12.8
AtrioventricularNode11.6
BDCA4+_DentriticCells14.2
Bonemarrow9.8
BronchialEpithelialCells9.3
CD105+_Endothelial34.5
CD14+_Monocytes13.25
CD19+_BCells(neg._sel.)12.55
CD33+_Myeloid14.9
CD34+131.8
CD4+_Tcells12.25
CD56+_NKCells21.15
CD71+_EarlyErythroid15.45
CD8+_Tcells9.85
CardiacMyocytes13
Caudatenucleus8.9
Cerebellum8.1
CerebellumPeduncles10.95
CiliaryGanglion8.25
CingulateCortex10.2
Colorectaladenocarcinoma9.75
DorsalRootGanglion8.15
FetalThyroid9.65
Fetalbrain23.25
Fetalliver29.95
Fetallung14.8
GlobusPallidus7.7
Heart12.6
Hypothalamus11
Kidney8.2
Leukemia_chronicMyelogenousK-56227.25
Leukemia_promyelocytic-HL-6017.25
Leukemialymphoblastic(MOLT-4)82.35
Liver12.65
Lung10.05
Lymphnode8.95
Lymphoma_burkitts(Daudi)16.25
Lymphoma_burkitts(Raji)13.55
MedullaOblongata11.9
OccipitalLobe8.55
OlfactoryBulb8.05
Ovary7
Pancreas9.55
PancreaticIslet19.6
ParietalLobe10.35
Pituitary11.3
Placenta9.95
Pons9.3
PrefrontalCortex12.65
Prostate11.65
Salivarygland8.45
SkeletalMuscle11.95
Skin8.95
SmoothMuscle11.05
Spinalcord10.5
SubthalamicNucleus8.85
SuperiorCervicalGanglion29.8
TemporalLobe9.2
Testis8.85
TestisGermCell44.75
TestisIntersitial72.5
TestisLeydigCell38.5
TestisSeminiferousTubule23.7
Thalamus9.85
Thymus7.6
Thyroid12.15
Tongue11.7
Tonsil9.8
Trachea8.45
TrigeminalGanglion12.55
Uterus8.2
UterusCorpus8.9
WholeBlood11.85
Wholebrain8.1
colon10.4
pineal_day20.4
pineal_night15.34
retina11.85
small_intestine10.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_5718_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.89 ± 0.61
Basal Forebrain4.47 ± 0.44
Basal Part of Pons4.25 ± 0.46
Cerebellar Cortex4.15 ± 0.44
Cerebellar Nuclei4.31 ± 0.44
Claustrum4.67 ± 0.69
Epithalamus4.43 ± 0.48
Frontal Lobe4.2 ± 0.52
Globus Pallidus4.39 ± 0.29
Hypothalamus4.33 ± 0.48
Insula4.47 ± 0.32
Limbic Lobe4.34 ± 0.46
Mesencephalon4.39 ± 0.47
Myelencephalon4.29 ± 0.53
Occipital Lobe4.39 ± 0.48
Parietal Lobe4.26 ± 0.49
Pontine Tegmentum4.35 ± 0.48
Striatum4.59 ± 0.43
Subthalamus3.97 ± 0.15
Temporal Lobe4.34 ± 0.44
Thalamus4.24 ± 0.52
White Matter5.76 ± 0.12
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Trim24CBCerebellum21.64
25.93
Trim24CTXCerebral cortex18.42
12.14
Trim24HIPHippocampal region33.71
32.99
Trim24HPFHippocampal formation30.83
27.39
Trim24HYHypothalamus14.47
10
Trim24LSXLateral septal complex6.11
3.88
Trim24MBMidbrain13.89
10.88
Trim24MYMedulla22.25
21.14
Trim24OLFOlfactory bulb45.34
36.18
Trim24PPons17.51
15.28
Trim24PALPallidum16.35
12.43
Trim24RHPRetrohippocampal region22.4
16.21
Trim24sAMYStriatum-like amygdalar nuclei23.57
15.98
Trim24STRStriatum13.93
9.44
Trim24STRdStriatum dorsal region10.29
6.93
Trim24STRvStriatum ventral region22.63
14.92
Trim24THThalamus11.3
8.18
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00073670 17 50 66 LNLLDTCAVCHQNIQSR Peptide Atlas
TIF1A_HUMAN_487 11 487 497 RPAPVGLPNPR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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