AutismKB 2.0

Annotation Detail for CCIN


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Basic Information Top
Gene Symbol:CCIN ( - )
Gene Full Name: calicin
Band: 9p13.3
Quick LinksEntrez ID:881; OMIM: 603960; Uniprot ID:CALI_HUMAN; ENSEMBL ID: ENSG00000185972; HGNC ID: 1568
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult14 / 19391217
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor1 / 2638453
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal161 / 336030747
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain15 / 110098913
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate1 / 1893455
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis172 / 330442520
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 210642_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.85
Adipocyte5.25
AdrenalCortex4.95
Adrenalgland4.05
Amygdala4.7
Appendix4.75
AtrioventricularNode3.6
BDCA4+_DentriticCells5.35
Bonemarrow4.65
BronchialEpithelialCells4.7
CD105+_Endothelial4.85
CD14+_Monocytes5.2
CD19+_BCells(neg._sel.)5
CD33+_Myeloid6.65
CD34+6.1
CD4+_Tcells5.25
CD56+_NKCells5.75
CD71+_EarlyErythroid4.9
CD8+_Tcells4.7
CardiacMyocytes5.95
Caudatenucleus4.25
Cerebellum3.85
CerebellumPeduncles5.35
CiliaryGanglion3.35
CingulateCortex4.85
Colorectaladenocarcinoma4.7
DorsalRootGanglion3.65
FetalThyroid4.8
Fetalbrain4.8
Fetalliver3.95
Fetallung3.9
GlobusPallidus3.65
Heart6.1
Hypothalamus5.2
Kidney3.8
Leukemia_chronicMyelogenousK-5624.25
Leukemia_promyelocytic-HL-604.2
Leukemialymphoblastic(MOLT-4)3.8
Liver6.2
Lung5.15
Lymphnode4
Lymphoma_burkitts(Daudi)6.45
Lymphoma_burkitts(Raji)6.6
MedullaOblongata4.35
OccipitalLobe4.25
OlfactoryBulb3.8
Ovary4.05
Pancreas6.2
PancreaticIslet5.15
ParietalLobe4.95
Pituitary5.9
Placenta4.85
Pons4.5
PrefrontalCortex5.6
Prostate5.6
Salivarygland3.8
SkeletalMuscle5.9
Skin3.75
SmoothMuscle5.4
Spinalcord5.05
SubthalamicNucleus4.8
SuperiorCervicalGanglion5.3
TemporalLobe4.25
Testis74.2
TestisGermCell58.75
TestisIntersitial97.75
TestisLeydigCell54.3
TestisSeminiferousTubule51.05
Thalamus4.8
Thymus3.7
Thyroid5.7
Tongue4.8
Tonsil5.25
Trachea3.9
TrigeminalGanglion4.65
Uterus3.8
UterusCorpus4.15
WholeBlood5.2
Wholebrain3.75
colon4.8
pineal_day5.7
pineal_night5.66
retina5.6
small_intestine4.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_4674_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.1 ± 0.97
Basal Forebrain1.67 ± 0.19
Basal Part of Pons1.46 ± 0.43
Cerebellar Cortex1.5 ± 0.67
Cerebellar Nuclei1.95 ± 0.7
Claustrum2.53 ± 0.85
Epithalamus1.42 ± 0.73
Frontal Lobe1.51 ± 0.53
Globus Pallidus2.27 ± 0.3
Hypothalamus1.73 ± 0.68
Insula1.56 ± 0.49
Limbic Lobe1.7 ± 0.67
Mesencephalon1.81 ± 0.64
Myelencephalon1.68 ± 0.62
Occipital Lobe1.79 ± 0.8
Parietal Lobe1.66 ± 0.6
Pontine Tegmentum1.72 ± 0.65
Striatum1.84 ± 0.5
Subthalamus1.83 ± 0.62
Temporal Lobe1.55 ± 0.57
Thalamus1.65 ± 0.56
White Matter2.23 ± 0.35
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
CcinCBCerebellum0.46
1.01
CcinCTXCerebral cortex0.15
0.19
CcinHIPHippocampal region0.11
0.12
CcinHPFHippocampal formation0.11
0.22
CcinHYHypothalamus0.14
0.2
CcinLSXLateral septal complex0.03
0
CcinMBMidbrain0.31
0.9
CcinMYMedulla0.32
0.63
CcinOLFOlfactory bulb0.62
0.64
CcinPPons0.17
0.26
CcinPALPallidum0.06
0.06
CcinRHPRetrohippocampal region0.08
0.23
CcinsAMYStriatum-like amygdalar nuclei0.09
0.22
CcinSTRStriatum0.04
0.06
CcinSTRdStriatum dorsal region0.02
0.04
CcinSTRvStriatum ventral region0.08
0.04
CcinTHThalamus0.24
0.8
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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