AutismKB 2.0

Annotation Detail for PER3


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Basic Information Top
Gene Symbol:PER3 ( GIG13 )
Gene Full Name: period homolog 3 (Drosophila)
Band: 1p36.23
Quick LinksEntrez ID:8863; OMIM: 603427; Uniprot ID:PER3_HUMAN; ENSEMBL ID: ENSG00000049246; HGNC ID: 8847
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst2 / 6231932
fetus33 / 56401258
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult84 / 193912143
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor8 / 9417884
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor1 / 1142468
esophageal tumor1 / 1729057
gastrointestinal tumor1 / 1193698
germ cell tumor8 / 26384530
glioma2 / 10688318
head and neck tumor12 / 13630288
kidney tumor1 / 6895914
leukemia2 / 9584220
liver tumor2 / 9635920
lung tumor5 / 10312748
lymphoma0 / 717550 
non-neoplasia7 / 9725071
normal141 / 336030741
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer3 / 10268029
retinoblastoma4 / 4635686
skin tumor2 / 12494916
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder1 / 2975733
blood0 / 1234780 
bone3 / 7165541
bone marrow2 / 4880140
brain44 / 110098939
cervix0 / 481710 
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus1 / 2020949
eye15 / 21105471
heart1 / 8962611
intestine2 / 2344728
kidney10 / 21177747
larynx1 / 2414541
liver4 / 20774319
lung12 / 33697435
lymph0 / 442700 
lymph node4 / 9161043
mammary gland9 / 15327158
mouth4 / 6705259
muscle3 / 10771527
nerve0 / 157680 
ovary4 / 10205139
pancreas9 / 21481241
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate7 / 18934536
salivary gland0 / 201550 
skin8 / 21057437
spleen4 / 5395274
stomach2 / 9661920
testis27 / 33044281
thymus0 / 811310 
thyroid9 / 47473189
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus5 / 23287821
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221045_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.25
Adipocyte8.1
AdrenalCortex10.7
Adrenalgland8.7
Amygdala24.25
Appendix13.25
AtrioventricularNode7.9
BDCA4+_DentriticCells6.9
Bonemarrow10.8
BronchialEpithelialCells8.95
CD105+_Endothelial8.6
CD14+_Monocytes10.65
CD19+_BCells(neg._sel.)8.05
CD33+_Myeloid10.8
CD34+10.15
CD4+_Tcells9.5
CD56+_NKCells11.3
CD71+_EarlyErythroid9.05
CD8+_Tcells10.1
CardiacMyocytes11.2
Caudatenucleus11.65
Cerebellum18.1
CerebellumPeduncles39.05
CiliaryGanglion8.2
CingulateCortex14.75
Colorectaladenocarcinoma8.2
DorsalRootGanglion7.85
FetalThyroid12.45
Fetalbrain8.35
Fetalliver8.85
Fetallung6.7
GlobusPallidus8.85
Heart11.15
Hypothalamus19.85
Kidney8.4
Leukemia_chronicMyelogenousK-56212.3
Leukemia_promyelocytic-HL-608.55
Leukemialymphoblastic(MOLT-4)9.25
Liver13.65
Lung10.55
Lymphnode8.95
Lymphoma_burkitts(Daudi)12.8
Lymphoma_burkitts(Raji)12.5
MedullaOblongata12.25
OccipitalLobe14.9
OlfactoryBulb12.3
Ovary7.15
Pancreas8.05
PancreaticIslet12.25
ParietalLobe15.55
Pituitary15.3
Placenta9.3
Pons9.95
PrefrontalCortex19.1
Prostate12.65
Salivarygland8.6
SkeletalMuscle10.35
Skin7.9
SmoothMuscle10.45
Spinalcord29.15
SubthalamicNucleus9.45
SuperiorCervicalGanglion11.4
TemporalLobe10.65
Testis8.7
TestisGermCell8.75
TestisIntersitial8.6
TestisLeydigCell10.35
TestisSeminiferousTubule8.5
Thalamus13
Thymus7.65
Thyroid57.8
Tongue14.15
Tonsil10
Trachea12.6
TrigeminalGanglion12.6
Uterus37.25
UterusCorpus9.25
WholeBlood5.5
Wholebrain21.45
colon16.6
pineal_day83.6
pineal_night63.8
retina149.4
small_intestine9.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P230948
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.1 ± 0.4
Basal Forebrain6.46 ± 0.18
Basal Part of Pons6.03 ± 0.37
Cerebellar Cortex6.67 ± 0.22
Cerebellar Nuclei6.21 ± 0.36
Claustrum6.41 ± 0.49
Epithalamus6.29 ± 0.21
Frontal Lobe6.03 ± 0.41
Globus Pallidus6.36 ± 0.6
Hypothalamus6.22 ± 0.47
Insula5.99 ± 0.28
Limbic Lobe6.01 ± 0.41
Mesencephalon6.13 ± 0.46
Myelencephalon6.24 ± 0.46
Occipital Lobe6.48 ± 0.34
Parietal Lobe6.21 ± 0.39
Pontine Tegmentum6.23 ± 0.41
Striatum6.27 ± 0.51
Subthalamus5.93 ± 0.31
Temporal Lobe6.17 ± 0.34
Thalamus6.46 ± 0.36
White Matter7.2 ± 0.15
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Per3CBCerebellum5.14
5.5
Per3CTXCerebral cortex12.33
8.03
Per3HIPHippocampal region11.51
10.06
Per3HPFHippocampal formation8.68
7.09
Per3HYHypothalamus2.23
1.59
Per3LSXLateral septal complex0.99
0.59
Per3MBMidbrain3.53
2.97
Per3MYMedulla6.14
6.1
Per3OLFOlfactory bulb6.92
5.22
Per3PPons5.52
5.44
Per3PALPallidum0.9
0.67
Per3RHPRetrohippocampal region2.96
2.06
Per3sAMYStriatum-like amygdalar nuclei5.6
3.4
Per3STRStriatum2.43
1.71
Per3STRdStriatum dorsal region1.55
1.15
Per3STRvStriatum ventral region4.63
3.11
Per3THThalamus1.78
1.67
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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