AutismKB 2.0

Annotation Detail for ST3GAL5


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Basic Information Top
Gene Symbol:ST3GAL5 ( SIAT9,SIATGM3S,ST3GalV )
Gene Full Name: ST3 beta-galactoside alpha-2,3-sialyltransferase 5
Band: 2p11.2
Quick LinksEntrez ID:8869; OMIM: 604402; Uniprot ID:SIAT9_HUMAN; ENSEMBL ID: ENSG00000115525; HGNC ID: 10872
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus24 / 56401242
neonate0 / 310970 
infant2 / 2362084
juvenile0 / 555560 
adult91 / 193912146
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor4 / 12794312
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor1 / 1729057
gastrointestinal tumor2 / 11936916
germ cell tumor27 / 263845102
glioma8 / 10688374
head and neck tumor8 / 13630258
kidney tumor7 / 68959101
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia3 / 9725030
normal171 / 336030750
ovarian tumor3 / 7668239
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor8 / 12494964
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland8 / 33197240
ascites0 / 400150 
bladder0 / 297570 
blood5 / 12347840
bone5 / 7165569
bone marrow1 / 4880120
brain83 / 110098975
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus1 / 2020949
eye10 / 21105447
heart3 / 8962633
intestine5 / 23447221
kidney13 / 21177761
larynx0 / 241450 
liver2 / 2077439
lung16 / 33697447
lymph0 / 442700 
lymph node6 / 9161065
mammary gland4 / 15327126
mouth0 / 670520 
muscle5 / 10771546
nerve0 / 157680 
ovary1 / 1020519
pancreas2 / 2148129
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta9 / 28082532
prostate1 / 1893455
salivary gland0 / 201550 
skin11 / 21057452
spleen3 / 5395255
stomach2 / 9661920
testis28 / 33044284
thymus7 / 8113186
thyroid8 / 47473168
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus4 / 23287817
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 203217_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts115.5
Adipocyte33.65
AdrenalCortex211.6
Adrenalgland161.2
Amygdala148.85
Appendix45.45
AtrioventricularNode24.6
BDCA4+_DentriticCells85.05
Bonemarrow37.45
BronchialEpithelialCells36.4
CD105+_Endothelial31.85
CD14+_Monocytes118
CD19+_BCells(neg._sel.)214.9
CD33+_Myeloid99.85
CD34+38.9
CD4+_Tcells123.05
CD56+_NKCells112.95
CD71+_EarlyErythroid26.55
CD8+_Tcells107.45
CardiacMyocytes42.15
Caudatenucleus112.3
Cerebellum34.25
CerebellumPeduncles74.55
CiliaryGanglion22.15
CingulateCortex75.85
Colorectaladenocarcinoma36.1
DorsalRootGanglion26.3
FetalThyroid169
Fetalbrain42.95
Fetalliver28.55
Fetallung66.05
GlobusPallidus45.3
Heart42.85
Hypothalamus190.65
Kidney16
Leukemia_chronicMyelogenousK-56231.55
Leukemia_promyelocytic-HL-6028.75
Leukemialymphoblastic(MOLT-4)26.1
Liver44.6
Lung139.95
Lymphnode60.4
Lymphoma_burkitts(Daudi)48.25
Lymphoma_burkitts(Raji)81.4
MedullaOblongata151.85
OccipitalLobe98.15
OlfactoryBulb25.9
Ovary22.3
Pancreas28.45
PancreaticIslet37.5
ParietalLobe99.9
Pituitary58.35
Placenta49.05
Pons68.6
PrefrontalCortex258.25
Prostate73.65
Salivarygland28.9
SkeletalMuscle47.9
Skin20.3
SmoothMuscle29.4
Spinalcord111.55
SubthalamicNucleus91.1
SuperiorCervicalGanglion41.55
TemporalLobe74.35
Testis36.7
TestisGermCell53.1
TestisIntersitial30.75
TestisLeydigCell48.3
TestisSeminiferousTubule31.85
Thalamus132.55
Thymus44.25
Thyroid155.55
Tongue33.05
Tonsil41.15
Trachea32.1
TrigeminalGanglion32.7
Uterus43.95
UterusCorpus45.05
WholeBlood49.3
Wholebrain190.6
colon34.2
pineal_day622.86
pineal_night688.78
retina146.4
small_intestine32.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P311869
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.62 ± 0.25
Basal Forebrain8.68 ± 0.15
Basal Part of Pons8.95 ± 0.29
Cerebellar Cortex8.3 ± 0.19
Cerebellar Nuclei8.91 ± 0.34
Claustrum9.16 ± 0.29
Epithalamus7.93 ± 0.49
Frontal Lobe8.6 ± 0.33
Globus Pallidus8.87 ± 0.22
Hypothalamus8.55 ± 0.49
Insula8.6 ± 0.16
Limbic Lobe8.67 ± 0.31
Mesencephalon8.63 ± 0.36
Myelencephalon8.65 ± 0.37
Occipital Lobe9.09 ± 0.34
Parietal Lobe8.83 ± 0.29
Pontine Tegmentum8.81 ± 0.28
Striatum9.26 ± 0.17
Subthalamus9.1 ± 0.45
Temporal Lobe8.53 ± 0.33
Thalamus8.88 ± 0.32
White Matter9.37 ± 0.31
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
St3gal5CBCerebellum53.48
81.32
St3gal5CTXCerebral cortex100
100
St3gal5HIPHippocampal region94.69
100
St3gal5HPFHippocampal formation99.66
100
St3gal5HYHypothalamus47.29
44.21
St3gal5LSXLateral septal complex26.19
20.96
St3gal5MBMidbrain50.15
57.59
St3gal5MYMedulla58.02
82.67
St3gal5OLFOlfactory bulb78.59
100
St3gal5PPons59.15
81.36
St3gal5PALPallidum45.74
49.5
St3gal5RHPRetrohippocampal region100
100
St3gal5sAMYStriatum-like amygdalar nuclei41.37
35.5
St3gal5STRStriatum73.15
65.15
St3gal5STRdStriatum dorsal region81.89
73.42
St3gal5STRvStriatum ventral region74.78
65.37
St3gal5THThalamus86.64
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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