Annotation Detail for RRP36
Basic Information Top
| Gene Symbol: | RRP36 ( C6orf153,dJ20C7.4 ) |
|---|---|
| Gene Full Name: | ribosomal RNA processing 36 homolog (S. cerevisiae) |
| Band: | 6p21.1 |
| Quick Links | Entrez ID:88745; OMIM: 613475; Uniprot ID:RRP36_HUMAN; ENSEMBL ID: ENSG00000124541; HGNC ID: 21374 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.309231
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 6 / 70761 | 84 |  |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 16 / 564012 | 28 | |
| neonate | 2 / 31097 | 64 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 81 / 1939121 | 41 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 8 / 94178 | 84 | |
| cervical tumor | 4 / 34366 | 116 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 11 / 119369 | 92 | |
| germ cell tumor | 12 / 263845 | 45 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 1 / 96359 | 10 |  |
| lung tumor | 13 / 103127 | 126 | |
| lymphoma | 8 / 71755 | 111 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 99 / 3360307 | 29 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 7 / 104616 | 66 | |
| primitive neuroectodermal tumor of the CNS | 14 / 125680 | 111 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 8 / 124949 | 64 | |
| soft tissue/muscle tissue tumor | 7 / 125191 | 55 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 1 / 29757 | 33 | |
| blood | 7 / 123478 | 56 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 29 / 1100989 | 26 | |
| cervix | 4 / 48171 | 83 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 12 / 215722 | 55 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 18 / 211054 | 85 | |
| heart | 1 / 89626 | 11 | |
| intestine | 6 / 234472 | 25 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 19 / 336974 | 56 | |
| lymph | 4 / 44270 | 90 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 8 / 153271 | 52 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 15 / 214812 | 69 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 8 / 280825 | 28 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 5 / 20155 | 248 |  |
| skin | 10 / 210574 | 47 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 11 / 96619 | 113 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 27 / 232878 | 115 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_152_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.15 ± 0.37 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.81 ± 0.23 | |
| Basal Part of Pons | 6.07 ± 0.21 | |
| Cerebellar Cortex | 5.72 ± 0.26 | |
| Cerebellar Nuclei | 6.21 ± 0.54 | |
| Claustrum | 6.31 ± 0.4 | |
| Epithalamus | 5.76 ± 0.27 | |
| Frontal Lobe | 5.92 ± 0.29 | |
| Globus Pallidus | 6.27 ± 0.23 | |
| Hypothalamus | 5.89 ± 0.33 | |
| Insula | 5.94 ± 0.22 | |
| Limbic Lobe | 5.98 ± 0.3 | |
| Mesencephalon | 5.95 ± 0.29 | |
| Myelencephalon | 5.9 ± 0.36 | |
| Occipital Lobe | 5.84 ± 0.22 | |
| Parietal Lobe | 5.95 ± 0.31 | |
| Pontine Tegmentum | 5.95 ± 0.31 | |
| Striatum | 6.04 ± 0.36 | |
| Subthalamus | 6.01 ± 0.18 | |
| Temporal Lobe | 5.91 ± 0.36 | |
| Thalamus | 5.86 ± 0.33 | |
| White Matter | 5.98 ± 0.38 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| BC011248 | CB | Cerebellum | 12.72 | |
| 14.47 | | |||
| BC011248 | CTX | Cerebral cortex | 16.69 | |
| 12.25 | | |||
| BC011248 | HIP | Hippocampal region | 13.77 | |
| 15.41 | | |||
| BC011248 | HPF | Hippocampal formation | 14.84 | |
| 14.9 | | |||
| BC011248 | HY | Hypothalamus | 5.75 | |
| 6.37 | | |||
| BC011248 | LSX | Lateral septal complex | 2.05 | |
| 2.81 | | |||
| BC011248 | MB | Midbrain | 3.74 | |
| 3.76 | | |||
| BC011248 | MY | Medulla | 19.12 | |
| 23.71 | | |||
| BC011248 | OLF | Olfactory bulb | 50.65 | |
| 44.56 | | |||
| BC011248 | P | Pons | 17.79 | |
| 22.03 | | |||
| BC011248 | PAL | Pallidum | 14.4 | |
| 16.06 | | |||
| BC011248 | RHP | Retrohippocampal region | 17.09 | |
| 14.01 | | |||
| BC011248 | sAMY | Striatum-like amygdalar nuclei | 17.8 | |
| 14.25 | | |||
| BC011248 | STR | Striatum | 13.38 | |
| 10.65 | | |||
| BC011248 | STRd | Striatum dorsal region | 8.51 | |
| 6.4 | | |||
| BC011248 | STRv | Striatum ventral region | 31.19 | |
| 24.04 | | |||
| BC011248 | TH | Thalamus | 13.9 | |
| 12.8 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00067121 | 15 | 122 | 136 | FDDLSGEYNPEVFDK | Peptide Atlas |