AutismKB 2.0

Annotation Detail for VNN2


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Basic Information Top
Gene Symbol:VNN2 ( FOAP-4,GPI-80 )
Gene Full Name: vanin 2
Band: 6q23.2
Quick LinksEntrez ID:8875; OMIM: 603571; Uniprot ID:VNN2_HUMAN; ENSEMBL ID: ENSG00000112303; HGNC ID: 12706
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus2 / 5640123
neonate1 / 3109732
infant0 / 236200 
juvenile2 / 5555635
adult12 / 19391216
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor1 / 2638453
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia4 / 9584241
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma11 / 71755153
non-neoplasia1 / 9725010
normal120 / 336030735
ovarian tumor0 / 766820 
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood88 / 123478712
bone0 / 716550 
bone marrow0 / 488010 
brain1 / 11009890 
cervix0 / 481710 
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart2 / 8962622
intestine0 / 2344720 
kidney2 / 2117779
larynx0 / 241450 
liver1 / 2077434
lung3 / 3369748
lymph1 / 4427022
lymph node12 / 91610130
mammary gland0 / 1532710 
mouth0 / 670520 
muscle1 / 1077159
nerve1 / 1576863
ovary0 / 1020510 
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta3 / 28082510
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen11 / 53952203
stomach0 / 966190 
testis0 / 3304420 
thymus3 / 8113136
thyroid0 / 474730 
tonsil2 / 16999117
trachea1 / 5241319
umbilical cord0 / 136800 
uterus4 / 23287817
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205922_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.3
Adipocyte6.2
AdrenalCortex7.55
Adrenalgland5.5
Amygdala6.25
Appendix16.5
AtrioventricularNode6.75
BDCA4+_DentriticCells92.95
Bonemarrow123.2
BronchialEpithelialCells6
CD105+_Endothelial7.1
CD14+_Monocytes1521.8
CD19+_BCells(neg._sel.)64.8
CD33+_Myeloid1354.1
CD34+13.5
CD4+_Tcells17.7
CD56+_NKCells39.3
CD71+_EarlyErythroid6.15
CD8+_Tcells52.7
CardiacMyocytes8.4
Caudatenucleus5.85
Cerebellum5.25
CerebellumPeduncles7.35
CiliaryGanglion5.2
CingulateCortex6.7
Colorectaladenocarcinoma6.25
DorsalRootGanglion5.3
FetalThyroid6.35
Fetalbrain6
Fetalliver5.7
Fetallung13.5
GlobusPallidus4.9
Heart8.5
Hypothalamus6.6
Kidney5.5
Leukemia_chronicMyelogenousK-5625.65
Leukemia_promyelocytic-HL-6028.05
Leukemialymphoblastic(MOLT-4)4.9
Liver9
Lung7.3
Lymphnode8.15
Lymphoma_burkitts(Daudi)52.85
Lymphoma_burkitts(Raji)15.4
MedullaOblongata5.6
OccipitalLobe5.65
OlfactoryBulb5.05
Ovary4.4
Pancreas5.25
PancreaticIslet7.7
ParietalLobe6.9
Pituitary7.6
Placenta6.85
Pons6.2
PrefrontalCortex7.15
Prostate7.7
Salivarygland5.3
SkeletalMuscle8.6
Skin5.35
SmoothMuscle7
Spinalcord6.7
SubthalamicNucleus5.95
SuperiorCervicalGanglion9.35
TemporalLobe6
Testis5.45
TestisGermCell5.15
TestisIntersitial5.45
TestisLeydigCell6.45
TestisSeminiferousTubule5.6
Thalamus6.65
Thymus4.9
Thyroid8
Tongue6.45
Tonsil19.85
Trachea5.5
TrigeminalGanglion7.3
Uterus4.85
UterusCorpus6.15
WholeBlood3804.65
Wholebrain4.75
colon6.5
pineal_day7.62
pineal_night7.6
retina7.9
small_intestine6.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_5935_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala1.9 ± 1
Basal Forebrain1.46 ± 0.18
Basal Part of Pons1.16 ± 0.36
Cerebellar Cortex1.32 ± 0.72
Cerebellar Nuclei1.77 ± 0.75
Claustrum2.38 ± 0.79
Epithalamus1.19 ± 0.7
Frontal Lobe1.34 ± 0.64
Globus Pallidus2.06 ± 0.36
Hypothalamus1.59 ± 0.69
Insula1.29 ± 0.51
Limbic Lobe1.45 ± 0.6
Mesencephalon1.65 ± 0.71
Myelencephalon1.5 ± 0.67
Occipital Lobe1.53 ± 0.72
Parietal Lobe1.41 ± 0.61
Pontine Tegmentum1.5 ± 0.64
Striatum1.63 ± 0.48
Subthalamus1.58 ± 0.58
Temporal Lobe1.37 ± 0.61
Thalamus1.43 ± 0.57
White Matter1.87 ± 0.15
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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