AutismKB 2.0

Annotation Detail for CACNA1I


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Basic Information Top
Gene Symbol:CACNA1I ( Cav3.3,KIAA1120 )
Gene Full Name: calcium channel, voltage-dependent, T type, alpha 1I subunit
Band: 22q13.1
Quick LinksEntrez ID:8911; OMIM: 608230; Uniprot ID:CAC1I_HUMAN; ENSEMBL ID: ENSG00000100346; HGNC ID: 1396
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus3 / 5640125
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult14 / 19391217
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma1 / 1068839
head and neck tumor2 / 13630214
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal22 / 33603076
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain15 / 110098913
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye1 / 2110544
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle2 / 10771518
nerve1 / 1576863
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid2 / 4747342
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221631_at
Cell line Expression level Expression bar
721_B_lymphoblasts11.7
Adipocyte12.5
AdrenalCortex14.3
Adrenalgland11.7
Amygdala19.1
Appendix14.75
AtrioventricularNode12
BDCA4+_DentriticCells15.3
Bonemarrow13.85
BronchialEpithelialCells12.6
CD105+_Endothelial14.25
CD14+_Monocytes14.7
CD19+_BCells(neg._sel.)13
CD33+_Myeloid18.3
CD34+13.5
CD4+_Tcells18.9
CD56+_NKCells15.5
CD71+_EarlyErythroid13.05
CD8+_Tcells13.95
CardiacMyocytes17.2
Caudatenucleus17.35
Cerebellum11.35
CerebellumPeduncles15.75
CiliaryGanglion14.7
CingulateCortex30.3
Colorectaladenocarcinoma13.8
DorsalRootGanglion12.9
FetalThyroid13.6
Fetalbrain35.55
Fetalliver12
Fetallung11.5
GlobusPallidus20.65
Heart17.4
Hypothalamus16.35
Kidney16.6
Leukemia_chronicMyelogenousK-56212.4
Leukemia_promyelocytic-HL-6010.55
Leukemialymphoblastic(MOLT-4)11.05
Liver18.35
Lung15.6
Lymphnode14.4
Lymphoma_burkitts(Daudi)17.8
Lymphoma_burkitts(Raji)19.2
MedullaOblongata16.25
OccipitalLobe15.35
OlfactoryBulb11.55
Ovary9.15
Pancreas11.2
PancreaticIslet14.65
ParietalLobe19.1
Pituitary16.45
Placenta14.05
Pons15.85
PrefrontalCortex83.85
Prostate15.8
Salivarygland13.05
SkeletalMuscle17.55
Skin21.05
SmoothMuscle15.95
Spinalcord15.1
SubthalamicNucleus16.6
SuperiorCervicalGanglion20.75
TemporalLobe15.25
Testis12
TestisGermCell11.95
TestisIntersitial10.45
TestisLeydigCell16.85
TestisSeminiferousTubule12.1
Thalamus13.35
Thymus11
Thyroid18.3
Tongue14.2
Tonsil13.65
Trachea11.3
TrigeminalGanglion14.85
Uterus11.6
UterusCorpus13.15
WholeBlood14.7
Wholebrain16.35
colon13.75
pineal_day17.7
pineal_night17.24
retina17.15
small_intestine12.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P399871
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala15.01 ± 0.67
Basal Forebrain14.74 ± 0.12
Basal Part of Pons14.86 ± 0.5
Cerebellar Cortex14.2 ± 0.31
Cerebellar Nuclei14.89 ± 0.46
Claustrum15.28 ± 0.7
Epithalamus14.28 ± 0.46
Frontal Lobe14.67 ± 0.49
Globus Pallidus15.34 ± 0.3
Hypothalamus14.57 ± 0.53
Insula14.49 ± 0.53
Limbic Lobe14.82 ± 0.58
Mesencephalon14.81 ± 0.5
Myelencephalon14.78 ± 0.56
Occipital Lobe14.66 ± 0.56
Parietal Lobe14.67 ± 0.52
Pontine Tegmentum14.57 ± 0.54
Striatum14.92 ± 0.53
Subthalamus14.83 ± 0.18
Temporal Lobe14.61 ± 0.55
Thalamus14.77 ± 0.45
White Matter15.41 ± 0.36
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cacna1iCBCerebellum9.22
10.51
Cacna1iCTXCerebral cortex69.26
55.28
Cacna1iHIPHippocampal region19.07
32.86
Cacna1iHPFHippocampal formation22.25
27.51
Cacna1iHYHypothalamus11.24
8.58
Cacna1iLSXLateral septal complex8.45
6.7
Cacna1iMBMidbrain14.35
12.36
Cacna1iMYMedulla12.53
13.26
Cacna1iOLFOlfactory bulb55.42
56.39
Cacna1iPPons10.65
10.65
Cacna1iPALPallidum9.45
8.01
Cacna1iRHPRetrohippocampal region28.15
22.69
Cacna1isAMYStriatum-like amygdalar nuclei15.19
12.66
Cacna1iSTRStriatum42.35
32.08
Cacna1iSTRdStriatum dorsal region54.38
41.26
Cacna1iSTRvStriatum ventral region29.64
22.51
Cacna1iTHThalamus12.32
15.28
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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