Annotation Detail for TRIM4
Basic Information Top
| Gene Symbol: | TRIM4 ( RNF87 ) |
|---|---|
| Gene Full Name: | tripartite motif-containing 4 |
| Band: | 7q22.1 |
| Quick Links | Entrez ID:89122; OMIM: NA; Uniprot ID:TRIM4_HUMAN; ENSEMBL ID: ENSG00000146833; HGNC ID: 16275 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.50749
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 13 / 564012 | 23 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 66 / 1939121 | 34 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 |  |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 5 / 71755 | 69 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 91 / 3360307 | 27 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 19 / 1100989 | 17 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 2 / 89626 | 22 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 1 / 24145 | 41 | |
| liver | 2 / 207743 | 9 | |
| lung | 12 / 336974 | 35 | |
| lymph | 4 / 44270 | 90 | |
| lymph node | 7 / 91610 | 76 | |
| mammary gland | 10 / 153271 | 65 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 9 / 214812 | 41 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 3 / 41328 | 72 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 7 / 210574 | 33 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 1 / 96619 | 10 | |
| testis | 2 / 330442 | 6 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 0 / 51780 | 0 |
- Probe name: A_24_P68247
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.68 ± 0.45 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.94 ± 0.42 | |
| Basal Part of Pons | 5.11 ± 0.56 | |
| Cerebellar Cortex | 5.79 ± 0.32 | |
| Cerebellar Nuclei | 5.46 ± 0.48 | |
| Claustrum | 5.9 ± 0.78 | |
| Epithalamus | 5.77 ± 0.44 | |
| Frontal Lobe | 5.24 ± 0.49 | |
| Globus Pallidus | 6.43 ± 0.28 | |
| Hypothalamus | 6.01 ± 1.4 | |
| Insula | 5.56 ± 0.37 | |
| Limbic Lobe | 5.58 ± 0.5 | |
| Mesencephalon | 5.64 ± 0.38 | |
| Myelencephalon | 5.55 ± 0.57 | |
| Occipital Lobe | 5.9 ± 0.51 | |
| Parietal Lobe | 5.55 ± 0.54 | |
| Pontine Tegmentum | 5.61 ± 0.51 | |
| Striatum | 5.76 ± 0.54 | |
| Subthalamus | 5.67 ± 0.72 | |
| Temporal Lobe | 5.48 ± 0.47 | |
| Thalamus | 5.41 ± 0.47 | |
| White Matter | 6.69 ± 0.54 | |
Mouse Brain ISH 
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00042250 | 16 | 278 | 293 | RFQVAVNLAEDTAHPK | Peptide Atlas |