Annotation Detail for UMODL1
Basic Information Top
| Gene Symbol: | UMODL1 ( - ) |
|---|---|
| Gene Full Name: | uromodulin-like 1 |
| Band: | 21q22.3 |
| Quick Links | Entrez ID:89766; OMIM: NA; Uniprot ID:UROL1_HUMAN; ENSEMBL ID: ENSG00000177398; HGNC ID: 12560 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.242520
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 1 / 564012 | 1 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 1 / 1939121 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 4 / 263845 | 15 |  |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 2 / 3360307 | 0 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 1 / 1100989 | 0 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 8 / 81131 | 98 |  |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_6064_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.54 ± 1 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.05 ± 0.19 | |
| Basal Part of Pons | 1.83 ± 0.37 | |
| Cerebellar Cortex | 2.04 ± 0.81 | |
| Cerebellar Nuclei | 2.41 ± 0.73 | |
| Claustrum | 2.96 ± 0.86 | |
| Epithalamus | 1.79 ± 0.69 | |
| Frontal Lobe | 1.92 ± 0.63 | |
| Globus Pallidus | 2.59 ± 0.32 | |
| Hypothalamus | 2.16 ± 0.65 | |
| Insula | 2.05 ± 0.66 | |
| Limbic Lobe | 2.07 ± 0.59 | |
| Mesencephalon | 2.25 ± 0.7 | |
| Myelencephalon | 2.14 ± 0.65 | |
| Occipital Lobe | 2.3 ± 0.74 | |
| Parietal Lobe | 2.11 ± 0.68 | |
| Pontine Tegmentum | 2.15 ± 0.7 | |
| Striatum | 2.27 ± 0.43 | |
| Subthalamus | 2.24 ± 0.62 | |
| Temporal Lobe | 1.99 ± 0.57 | |
| Thalamus | 2.11 ± 0.58 | |
| White Matter | 2.58 ± 0.24 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Umodl1 | CB | Cerebellum | 0.92 | |
| 2.07 | | |||
| Umodl1 | CTX | Cerebral cortex | 1.45 | |
| 2.16 | | |||
| Umodl1 | HIP | Hippocampal region | 0.35 | |
| 0.73 | | |||
| Umodl1 | HPF | Hippocampal formation | 0.28 | |
| 0.53 | | |||
| Umodl1 | HY | Hypothalamus | 0.02 | |
| 0.03 | | |||
| Umodl1 | LSX | Lateral septal complex | 0.24 | |
| 0.24 | | |||
| Umodl1 | MB | Midbrain | 0.17 | |
| 0.22 | | |||
| Umodl1 | MY | Medulla | 1.33 | |
| 2.02 | | |||
| Umodl1 | OLF | Olfactory bulb | 0.17 | |
| 0.19 | | |||
| Umodl1 | P | Pons | 0.15 | |
| 0.21 | | |||
| Umodl1 | PAL | Pallidum | 0.07 | |
| 0.05 | | |||
| Umodl1 | RHP | Retrohippocampal region | 0.08 | |
| 0.12 | | |||
| Umodl1 | sAMY | Striatum-like amygdalar nuclei | 0.03 | |
| 0 | | |||
| Umodl1 | STR | Striatum | 0.35 | |
| 0.64 | | |||
| Umodl1 | STRd | Striatum dorsal region | 0.19 | |
| 0.52 | | |||
| Umodl1 | STRv | Striatum ventral region | 1.17 | |
| 1.3 | | |||
| Umodl1 | TH | Thalamus | 0.9 | |
| 1.63 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| UROL1_HUMAN_1062 | 13 | 1062 | 1074 | NDLSQEGIIHHLK | PRIDE |
| UROL1_HUMAN_1202 | 15 | 1202 | 1216 | IFSFINDSIVYLHCK | PRIDE |
| UROL1_HUMAN_1217 | 13 | 1217 | 1229 | LRVCMESPGATCK | PRIDE |
| UROL1_HUMAN_1295 | 3 | 1295 | 1297 | YQR | PRIDE |
| UROL1_HUMAN_183 | 8 | 183 | 190 | ELQQVDPR | PRIDE |
| UROL1_HUMAN_28 | 13 | 28 | 40 | GLSLLGYQLCSHR | PRIDE |
| UROL1_HUMAN_349 | 6 | 349 | 354 | GMELLR | PRIDE |
| UROL1_HUMAN_395 | 11 | 395 | 405 | TNAQVFEVTIK | PRIDE |
| UROL1_HUMAN_48 | 21 | 48 | 68 | VEAVQTSYTSYVSCGGWIPWR | PRIDE |
| UROL1_HUMAN_663 | 13 | 663 | 675 | STRETLLNPTWLR | PRIDE |
| UROL1_HUMAN_698 | 11 | 698 | 708 | TPACVPVSIGR | PRIDE |
| UROL1_HUMAN_991 | 7 | 991 | 997 | VLCEIEK | PRIDE |