AutismKB 2.0

Annotation Detail for NAV3


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Basic Information Top
Gene Symbol:NAV3 ( KIAA0938,POMFIL1,STEERIN3,unc53H3 )
Gene Full Name: neuron navigator 3
Band: 12q21.2
Quick LinksEntrez ID:89795; OMIM: 611629; Uniprot ID:NAV3_HUMAN; ENSEMBL ID: ENSG00000067798; HGNC ID: 15998
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus47 / 56401283
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult32 / 193912116
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor6 / 26384522
glioma3 / 10688328
head and neck tumor3 / 13630222
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia5 / 9725051
normal122 / 336030736
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain80 / 110098972
cervix0 / 481710 
connective tissue4 / 14925526
ear2 / 16212123
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye10 / 21105447
heart2 / 8962622
intestine0 / 2344720 
kidney1 / 2117774
larynx1 / 2414541
liver2 / 2077439
lung4 / 33697411
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary1 / 1020519
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta1 / 2808253
prostate2 / 18934510
salivary gland0 / 201550 
skin1 / 2105744
spleen3 / 5395255
stomach1 / 9661910
testis6 / 33044218
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus5 / 23287821
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204823_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.25
Adipocyte36.65
AdrenalCortex6.3
Adrenalgland4.85
Amygdala129.25
Appendix6.85
AtrioventricularNode4.35
BDCA4+_DentriticCells5.5
Bonemarrow5.65
BronchialEpithelialCells5.55
CD105+_Endothelial5.25
CD14+_Monocytes5.65
CD19+_BCells(neg._sel.)5.55
CD33+_Myeloid6.6
CD34+6.4
CD4+_Tcells5.55
CD56+_NKCells6.15
CD71+_EarlyErythroid5
CD8+_Tcells4.9
CardiacMyocytes7.25
Caudatenucleus11.4
Cerebellum9.15
CerebellumPeduncles13.75
CiliaryGanglion4.15
CingulateCortex75
Colorectaladenocarcinoma5.3
DorsalRootGanglion5.35
FetalThyroid5.4
Fetalbrain762.7
Fetalliver4.85
Fetallung4.5
GlobusPallidus39.15
Heart7.35
Hypothalamus72.4
Kidney4.5
Leukemia_chronicMyelogenousK-5624.9
Leukemia_promyelocytic-HL-604.8
Leukemialymphoblastic(MOLT-4)4.25
Liver7.5
Lung6.1
Lymphnode4.7
Lymphoma_burkitts(Daudi)7
Lymphoma_burkitts(Raji)7.9
MedullaOblongata41.65
OccipitalLobe85.55
OlfactoryBulb27.25
Ovary3.8
Pancreas4.4
PancreaticIslet5.85
ParietalLobe68.5
Pituitary14.35
Placenta5.45
Pons10.45
PrefrontalCortex243.55
Prostate6.3
Salivarygland5.15
SkeletalMuscle7.05
Skin4.45
SmoothMuscle11.15
Spinalcord64.8
SubthalamicNucleus29.7
SuperiorCervicalGanglion8.3
TemporalLobe12.6
Testis4.75
TestisGermCell4.55
TestisIntersitial4.6
TestisLeydigCell5.5
TestisSeminiferousTubule4.85
Thalamus29.15
Thymus4.1
Thyroid6.7
Tongue6
Tonsil5.25
Trachea4.5
TrigeminalGanglion5.9
Uterus4.6
UterusCorpus5.15
WholeBlood6
Wholebrain52.9
colon5.5
pineal_day6.5
pineal_night6.48
retina21.95
small_intestine5.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P13740
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.71 ± 0.3
Basal Forebrain7.16 ± 0.27
Basal Part of Pons7.39 ± 0.25
Cerebellar Cortex7.59 ± 0.18
Cerebellar Nuclei6.53 ± 0.38
Claustrum7.98 ± 0.26
Epithalamus7.12 ± 0.33
Frontal Lobe7.5 ± 0.36
Globus Pallidus6.65 ± 0.3
Hypothalamus7.18 ± 0.23
Insula7.69 ± 0.16
Limbic Lobe7.74 ± 0.36
Mesencephalon7.18 ± 0.45
Myelencephalon7.37 ± 0.42
Occipital Lobe7.2 ± 0.5
Parietal Lobe7.4 ± 0.34
Pontine Tegmentum7.43 ± 0.37
Striatum6.52 ± 0.56
Subthalamus6.84 ± 0.37
Temporal Lobe7.61 ± 0.28
Thalamus7.24 ± 0.36
White Matter7.97 ± 0.06
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00064841 7 823 829 DGDILGK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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