Annotation Detail for NAV1
Basic Information Top
| Gene Symbol: | NAV1 ( DKFZp781D0314,FLJ12560,FLJ14203,KIAA1151,MGC14961,POMFIL3,STEERIN1,UNC53H1 ) |
|---|---|
| Gene Full Name: | neuron navigator 1 |
| Band: | 1q32.1 |
| Quick Links | Entrez ID:89796; OMIM: 611628; Uniprot ID:NAV1_HUMAN; ENSEMBL ID: ENSG00000134369; HGNC ID: 15989 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.585374
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 9 / 70761 | 127 |  |
| blastocyst | 6 / 62319 | 96 | |
| fetus | 91 / 564012 | 161 | |
| neonate | 2 / 31097 | 64 | |
| infant | 1 / 23620 | 42 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 176 / 1939121 | 90 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 13 / 94178 | 138 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 8 / 82823 | 96 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 41 / 263845 | 155 | |
| glioma | 15 / 106883 | 140 | |
| head and neck tumor | 29 / 136302 | 212 |  |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 5 / 95842 | 52 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 7 / 103127 | 67 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 254 / 3360307 | 75 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 10 / 124949 | 80 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 3 / 13106 | 228 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 3 / 29757 | 100 | |
| blood | 3 / 123478 | 24 | |
| bone | 5 / 71655 | 69 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 143 / 1100989 | 129 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 6 / 149255 | 40 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 24 / 215722 | 111 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 21 / 211054 | 99 | |
| heart | 16 / 89626 | 178 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 10 / 211777 | 47 | |
| larynx | 1 / 24145 | 41 | |
| liver | 6 / 207743 | 28 | |
| lung | 26 / 336974 | 77 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 14 / 153271 | 91 | |
| mouth | 24 / 67052 | 357 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 16 / 214812 | 74 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 4 / 41328 | 96 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 20 / 280825 | 71 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 20 / 210574 | 94 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 18 / 330442 | 54 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 4 / 13680 | 292 | |
| uterus | 14 / 232878 | 60 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_24_P212096
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.44 ± 0.29 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.46 ± 0.12 | |
| Basal Part of Pons | 8.09 ± 0.26 | |
| Cerebellar Cortex | 8.04 ± 0.2 | |
| Cerebellar Nuclei | 8.15 ± 0.24 | |
| Claustrum | 8.42 ± 0.37 | |
| Epithalamus | 7.79 ± 0.6 | |
| Frontal Lobe | 8.38 ± 0.38 | |
| Globus Pallidus | 8.98 ± 0.12 | |
| Hypothalamus | 8.1 ± 0.39 | |
| Insula | 8.39 ± 0.28 | |
| Limbic Lobe | 8.67 ± 0.31 | |
| Mesencephalon | 8.41 ± 0.34 | |
| Myelencephalon | 8.41 ± 0.39 | |
| Occipital Lobe | 8.4 ± 0.29 | |
| Parietal Lobe | 8.33 ± 0.37 | |
| Pontine Tegmentum | 8.4 ± 0.36 | |
| Striatum | 8.41 ± 0.38 | |
| Subthalamus | 8.02 ± 0.15 | |
| Temporal Lobe | 8.49 ± 0.31 | |
| Thalamus | 8.53 ± 0.26 | |
| White Matter | 9.76 ± 0.2 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Nav1 | CB | Cerebellum | 20.52 | |
| 22.3 | | |||
| Nav1 | CTX | Cerebral cortex | 35.54 | |
| 28.24 | | |||
| Nav1 | HIP | Hippocampal region | 32.09 | |
| 41.38 | | |||
| Nav1 | HPF | Hippocampal formation | 29.94 | |
| 32.15 | | |||
| Nav1 | HY | Hypothalamus | 16.29 | |
| 11.35 | | |||
| Nav1 | LSX | Lateral septal complex | 10.42 | |
| 7.24 | | |||
| Nav1 | MB | Midbrain | 18.14 | |
| 15.32 | | |||
| Nav1 | MY | Medulla | 29.57 | |
| 25.93 | | |||
| Nav1 | OLF | Olfactory bulb | 67.82 | |
| 63.23 | | |||
| Nav1 | P | Pons | 26.03 | |
| 22.26 | | |||
| Nav1 | PAL | Pallidum | 22.15 | |
| 16.73 | | |||
| Nav1 | RHP | Retrohippocampal region | 26.43 | |
| 20.16 | | |||
| Nav1 | sAMY | Striatum-like amygdalar nuclei | 18.29 | |
| 12.42 | | |||
| Nav1 | STR | Striatum | 9.92 | |
| 7.48 | | |||
| Nav1 | STRd | Striatum dorsal region | 7.92 | |
| 6.42 | | |||
| Nav1 | STRv | Striatum ventral region | 11.76 | |
| 8.24 | | |||
| Nav1 | TH | Thalamus | 21.05 | |
| 16.23 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00072657 | 14 | 932 | 945 | LEALNSAHQLDQLR | Peptide Atlas |