AutismKB 2.0

Annotation Detail for NAV2


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Basic Information Top
Gene Symbol:NAV2 ( FLJ10633,FLJ11030,FLJ23707,FLJ77876,HELAD1,KIAA1419,POMFIL2,RAINB1,STEERIN2,UNC53H2 )
Gene Full Name: neuron navigator 2
Band: 11p15.1
Quick LinksEntrez ID:89797; OMIM: 607026; Uniprot ID:NAV2_HUMAN; ENSEMBL ID: ENSG00000166833; HGNC ID: 15997
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body14 / 70761197
blastocyst2 / 6231932
fetus37 / 56401265
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult96 / 193912149
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor4 / 11424635
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor21 / 26384579
glioma4 / 10688337
head and neck tumor11 / 13630280
kidney tumor4 / 6895958
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor5 / 10312748
lymphoma0 / 717550 
non-neoplasia3 / 9725030
normal146 / 336030743
ovarian tumor2 / 7668226
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor8 / 12494964
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone3 / 7165541
bone marrow0 / 488010 
brain54 / 110098949
cervix0 / 481710 
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue18 / 21572283
esophagus0 / 202090 
eye5 / 21105423
heart3 / 8962633
intestine6 / 23447225
kidney8 / 21177737
larynx1 / 2414541
liver6 / 20774328
lung31 / 33697491
lymph0 / 442700 
lymph node0 / 916100 
mammary gland5 / 15327132
mouth1 / 6705214
muscle5 / 10771546
nerve1 / 1576863
ovary2 / 10205119
pancreas12 / 21481255
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta13 / 28082546
prostate0 / 1893450 
salivary gland0 / 201550 
skin15 / 21057471
spleen0 / 539520 
stomach1 / 9661910
testis10 / 33044230
thymus1 / 8113112
thyroid9 / 47473189
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus17 / 23287872
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218330_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts17.6
Adipocyte21.15
AdrenalCortex11
Adrenalgland8.3
Amygdala51.2
Appendix10.65
AtrioventricularNode8.2
BDCA4+_DentriticCells8.2
Bonemarrow9.3
BronchialEpithelialCells11.55
CD105+_Endothelial9.6
CD14+_Monocytes9.5
CD19+_BCells(neg._sel.)10.05
CD33+_Myeloid11.75
CD34+11.8
CD4+_Tcells10.1
CD56+_NKCells11.7
CD71+_EarlyErythroid8.8
CD8+_Tcells7.15
CardiacMyocytes14.1
Caudatenucleus10.85
Cerebellum31.65
CerebellumPeduncles12.2
CiliaryGanglion7.85
CingulateCortex23.8
Colorectaladenocarcinoma40.8
DorsalRootGanglion8.6
FetalThyroid15.8
Fetalbrain382
Fetalliver8.9
Fetallung10.15
GlobusPallidus14
Heart13.7
Hypothalamus50.95
Kidney8.55
Leukemia_chronicMyelogenousK-5628.9
Leukemia_promyelocytic-HL-608.3
Leukemialymphoblastic(MOLT-4)7.15
Liver13.45
Lung20.4
Lymphnode7.7
Lymphoma_burkitts(Daudi)12.95
Lymphoma_burkitts(Raji)13.7
MedullaOblongata13.55
OccipitalLobe31.65
OlfactoryBulb36.6
Ovary6.3
Pancreas8.95
PancreaticIslet13
ParietalLobe10.95
Pituitary12.05
Placenta58.2
Pons11.55
PrefrontalCortex127.2
Prostate11.75
Salivarygland15.2
SkeletalMuscle11.8
Skin8.65
SmoothMuscle11.55
Spinalcord130.4
SubthalamicNucleus9.75
SuperiorCervicalGanglion12.45
TemporalLobe11.5
Testis7.95
TestisGermCell7.15
TestisIntersitial7.85
TestisLeydigCell9.9
TestisSeminiferousTubule8.45
Thalamus14.9
Thymus7.4
Thyroid77.25
Tongue10.55
Tonsil9.6
Trachea8.1
TrigeminalGanglion12.65
Uterus9.9
UterusCorpus11
WholeBlood9.4
Wholebrain15
colon62.6
pineal_day221.1
pineal_night163.04
retina28.275
small_intestine26.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P933580
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.28 ± 0.54
Basal Forebrain7.91 ± 0.36
Basal Part of Pons6.69 ± 0.37
Cerebellar Cortex6.62 ± 0.2
Cerebellar Nuclei6.98 ± 0.33
Claustrum7.05 ± 0.64
Epithalamus7.8 ± 0.46
Frontal Lobe6.94 ± 0.43
Globus Pallidus8.25 ± 0.28
Hypothalamus7.25 ± 0.23
Insula7 ± 0.38
Limbic Lobe7.12 ± 0.6
Mesencephalon7.44 ± 0.59
Myelencephalon7.18 ± 0.6
Occipital Lobe7.41 ± 0.75
Parietal Lobe7.08 ± 0.42
Pontine Tegmentum7.19 ± 0.49
Striatum8.13 ± 0.44
Subthalamus7.16 ± 0.58
Temporal Lobe6.97 ± 0.46
Thalamus7.14 ± 0.34
White Matter8.3 ± 0.6
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
5330421F07RikCBCerebellum54.95
54.61
5330421F07RikCTXCerebral cortex91.2
77.91
5330421F07RikHIPHippocampal region74.47
89.47
5330421F07RikHPFHippocampal formation77.92
81.91
5330421F07RikHYHypothalamus54.47
52.96
5330421F07RikLSXLateral septal complex87.69
75.62
5330421F07RikMBMidbrain60.96
58.63
5330421F07RikMYMedulla61.88
61.39
5330421F07RikOLFOlfactory bulb92.22
85.71
5330421F07RikPPons62.7
60.72
5330421F07RikPALPallidum55.9
54.55
5330421F07RikRHPRetrohippocampal region82.2
75.05
5330421F07RiksAMYStriatum-like amygdalar nuclei55.34
53.36
5330421F07RikSTRStriatum65.73
60.21
5330421F07RikSTRdStriatum dorsal region65.51
59.48
5330421F07RikSTRvStriatum ventral region66.32
62.63
5330421F07RikTHThalamus85.13
78.04
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00027925 13 1209 1221 SSTSSIDSNISSK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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