Annotation Detail for SEC16B
Basic Information Top
| Gene Symbol: | SEC16B ( DKFZp686C2486,FLJ23871,FLJ25761,FLJ33652,FLJ36620,LZTR2,PGPR-p117,RGPR,SEC16S ) |
|---|---|
| Gene Full Name: | SEC16 homolog B (S. cerevisiae) |
| Band: | 1q25.2 |
| Quick Links | Entrez ID:89866; OMIM: 612855; Uniprot ID:SC16B_HUMAN; ENSEMBL ID: ENSG00000120341; HGNC ID: 30301 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.149540
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 0 / 564012 | 0 | |
| neonate | 2 / 31097 | 64 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 25 / 1939121 | 12 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 6 / 114246 | 52 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 25 / 3360307 | 7 |  |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 1 / 123478 | 8 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 5 / 1100989 | 4 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 2 / 96619 | 20 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_12206_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.21 ± 0.99 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.72 ± 0.2 | |
| Basal Part of Pons | 1.4 ± 0.32 | |
| Cerebellar Cortex | 1.63 ± 0.68 | |
| Cerebellar Nuclei | 2.11 ± 0.71 | |
| Claustrum | 2.6 ± 0.85 | |
| Epithalamus | 1.5 ± 0.74 | |
| Frontal Lobe | 1.61 ± 0.61 | |
| Globus Pallidus | 2.35 ± 0.24 | |
| Hypothalamus | 1.8 ± 0.69 | |
| Insula | 1.72 ± 0.56 | |
| Limbic Lobe | 1.8 ± 0.59 | |
| Mesencephalon | 1.96 ± 0.65 | |
| Myelencephalon | 1.81 ± 0.65 | |
| Occipital Lobe | 1.86 ± 0.64 | |
| Parietal Lobe | 1.85 ± 0.71 | |
| Pontine Tegmentum | 1.86 ± 0.68 | |
| Striatum | 1.92 ± 0.5 | |
| Subthalamus | 2.11 ± 0.87 | |
| Temporal Lobe | 1.73 ± 0.66 | |
| Thalamus | 1.75 ± 0.56 | |
| White Matter | 2.24 ± 0.31 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Lztr2 | CB | Cerebellum | 5.75 | |
| 7.01 | | |||
| Lztr2 | CTX | Cerebral cortex | 3.57 | |
| 2.68 | | |||
| Lztr2 | HIP | Hippocampal region | 4.38 | |
| 4.7 | | |||
| Lztr2 | HPF | Hippocampal formation | 3.14 | |
| 3.26 | | |||
| Lztr2 | HY | Hypothalamus | 1.96 | |
| 1.56 | | |||
| Lztr2 | LSX | Lateral septal complex | 1.56 | |
| 2.03 | | |||
| Lztr2 | MB | Midbrain | 1.1 | |
| 1.47 | | |||
| Lztr2 | MY | Medulla | 6.27 | |
| 6.34 | | |||
| Lztr2 | OLF | Olfactory bulb | 6.8 | |
| 4.78 | | |||
| Lztr2 | P | Pons | 4.43 | |
| 4.98 | | |||
| Lztr2 | PAL | Pallidum | 1.46 | |
| 1.43 | | |||
| Lztr2 | RHP | Retrohippocampal region | 0.94 | |
| 1.15 | | |||
| Lztr2 | sAMY | Striatum-like amygdalar nuclei | 1.75 | |
| 2.28 | | |||
| Lztr2 | STR | Striatum | 1.24 | |
| 1.35 | | |||
| Lztr2 | STRd | Striatum dorsal region | 0.76 | |
| 0.97 | | |||
| Lztr2 | STRv | Striatum ventral region | 2.57 | |
| 1.78 | | |||
| Lztr2 | TH | Thalamus | 2.82 | |
| 2.46 | |